MCP server for interactive exploration of AnnData h5ad files

Navigation

Verified details

These details have been verified by PyPI
Project links
GitHub Statistics
Maintainers
Avatar for noopdog from gravatar.com noopdog

Unverified details

These details have not been verified by PyPI
Meta
  • License: MIT License (MIT)
  • Author: Clever Canary
  • Requires: Python <4.0, >=3.10
Classifiers
Report project as malware

Project description

hca-anndata-mcp

MCP server for interactive exploration of AnnData h5ad files.

Usage

# Run the MCP server
hca-anndata-mcp

# Or via poetry
poetry run hca-anndata-mcp

Tools

  • locate_files — Find all .h5ad files in a directory
  • get_summary — Structural overview: cell/gene counts, columns, embeddings, layers
  • get_storage_info — HDF5 compression, chunking, sparse format details
  • get_descriptive_stats — Descriptive statistics and value counts for obs/var columns
  • view_data — View slices of any attribute (obs, var, X, obsm, uns, etc.)
  • plot_embedding — UMAP/PCA scatter plots colored by obs column or gene
  • get_cap_annotations — Inspect CAP cell annotation metadata, marker genes, rationale

Project details

Verified details

These details have been verified by PyPI
Project links
GitHub Statistics
Maintainers
Avatar for noopdog from gravatar.com noopdog

Unverified details

These details have not been verified by PyPI
Meta
  • License: MIT License (MIT)
  • Author: Clever Canary
  • Requires: Python <4.0, >=3.10
Classifiers

Release history Release notifications | RSS feed

0.5.0

0.4.1

0.3.0

This version

0.2.0

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

hca_anndata_mcp-0.2.0.tar.gz (2.1 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

hca_anndata_mcp-0.2.0-py3-none-any.whl (3.6 kB view details)

Uploaded Python 3

File details

Details for the file hca_anndata_mcp-0.2.0.tar.gz.

File metadata

  • Download URL: hca_anndata_mcp-0.2.0.tar.gz
  • Upload date:
  • Size: 2.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/6.1.0 CPython/3.13.7

File hashes

Hashes for hca_anndata_mcp-0.2.0.tar.gz
Algorithm Hash digest
SHA256 bf832d9f8af6300307f3058e8d0739d756c8d6f7dd19e15820ba567b031b7d26
MD5 e73631d74b72da5f48ac4e5c07ae16b5
BLAKE2b-256 458d7f72c25bd5e5a8553a6e119d93855845641664d7bfbdd83ff02d71e51c63

See more details on using hashes here.

Provenance

The following attestation bundles were made for hca_anndata_mcp-0.2.0.tar.gz:

Publisher: release-please.yml on clevercanary/hca-validation-tools

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file hca_anndata_mcp-0.2.0-py3-none-any.whl.

File metadata

File hashes

Hashes for hca_anndata_mcp-0.2.0-py3-none-any.whl
Algorithm Hash digest
SHA256 7527727d5eee68dcee244091d9fb0fdb8d2f32d67edc3e39337397bf231c9635
MD5 c412f9d9c6c8dc08fd79298f177fe90a
BLAKE2b-256 60018a41ed8b743279a286054f8835fcf7ba011bb9fe7ede1e60a8fee8af3cdc

See more details on using hashes here.

Provenance

The following attestation bundles were made for hca_anndata_mcp-0.2.0-py3-none-any.whl:

Publisher: release-please.yml on clevercanary/hca-validation-tools

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page