Intelligent S3 synchronization for HCA Atlas data
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Project description
HCA Smart-Sync
Intelligent S3 data synchronization for HCA Atlas source datasets and integrated objects.
Installation
cd smart-sync
poetry install
Usage
# Basic sync
poetry run hca-smart-sync sync gut-v1 --profile my-profile
# Dry run
poetry run hca-smart-sync sync gut-v1 --profile my-profile --dry-run
# Development environment
poetry run hca-smart-sync sync gut-v1 --profile my-profile --environment dev
Development
# Install development dependencies
make dev
# Run tests
make test-all
# Run with coverage
make test-cov
# Run linting
make lint
# Format code
make format
Features
- SHA256 checksum-based synchronization
- Manifest-driven uploads
- AWS CLI integration with progress display
- Environment-based bucket selection
- Interactive upload confirmation
- Research-grade data integrity verification
Configuration
The tool supports environment-based bucket selection:
prod(default):hca-atlas-tracker-datadev:hca-atlas-tracker-data-dev
Requirements
- Python 3.10+
- AWS CLI configured with appropriate profiles
- Poetry for dependency management
Project details
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