hdmseg

Python bindings for population-consistent spectral segmentation by correspondence-collapsed consensus diffusion.

python -m pip install "git+https://github.com/agporto/hdmseg.git#subdirectory=python"

import hdmseg

segmentation = hdmseg.segment(X)  # X has shape (N, M, D)
segmentation.labels               # one region id per corresponding locus

The current implementation uses dense M × M operators and an exact dense eigendecomposition. It is frame-free and is not a horizontal or hypoelliptic diffusion-map implementation.

See the repository README and docs/TUNING.md for the method, complete API, complexity limits, and development instructions.

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