This is a pre-production deployment of Warehouse, however changes made here WILL affect the production instance of PyPI.
Latest Version Dependencies status unknown Test status unknown Test coverage unknown
Project Description

helix facilitates interactions with the Helix genetics platform.

Installation

On Ubuntu 16.04:

$ pip install helix ipython
$ ipython

In [1]: from helix import HelixClient

In [2]: hc = HelixClient(
   ...:     base_urls={
   ...:         'genomics': 'https://genomics.staging.helix.com/v0/',
   ...:         'identity': 'https://api.staging.helix.com/v0/'},
   ...:     credentials={
   ...:         'genomics': {
   ...:             'client_id': 'CL-AQ3EJLBNNDE7LJZYVGUOMM4WA5HBOHEL',
   ...:             'client_secret': 'CS-Y5MFWTTZU67LOIEBOWFT2LE7DEI3OPP7'},
   ...:          'identity': {
   ...:              'client_id': 'CL-7ICCDTTMGWK7VHTJIHCPWZZ7EEZBID7Z',
   ...:              'client_secret': 'CS-B7XBHYQLWURKBV3ZXVBGK7SXIZ7JGKTG'}})

In [3]: events_iterator = hc.get_events(after=0)

In [4]: event = next(events_iterator)

In [5]: event
Out[5]:
{u'eventType': u'accountUpdate',
 u'pacId': u'PC-XIMPMZE75Q5XQHDKS6EC3EDSWAQJF25A',
 u'sequenceNum': 2,
 u'timestamp': u'2016-08-05T21:08:35Z'}

In [6]: pacid = "PC-VCIOSK47ERXXIBPO5ZBOMW2HSNCQETCY"

In [7]: hc.get_customer(pacid)
Out[7]:
{u'email': u'joe@example.com',
 u'firstName': u'Test',
 u'lastName': u'User',
 u'supportId': u'US-X3SY-3PD9T'}

In [8]: hc.get_sample_status(pacid)[:3]
Out[8]:
[{u'status': u'Data Delivery Complete', u'timestamp': u'2016-11-16T18:21:13Z'},
 {u'status': u'Data Delivery Complete', u'timestamp': u'2016-11-16T18:17:52Z'},
 {u'status': u'Data Delivery Complete', u'timestamp': u'2016-11-16T01:49:23Z'}]

In [9]: hc.get_variants(pacid)[:2]

Developer quick start

hg clone git@github.com:reece/helix.git
cd helix
make devready
source venv/bin/activate

Makefile Commands

$ make
BASIC USAGE
  help -- display this help message
SETUP, INSTALLATION, PACKAGING
  venv: make a Python 3 virtual environment
  setup: setup/upgrade packages *in current environment*
  devready: create venv, install prerequisites, install pkg in develop mode
  develop: install package in develop mode
  install: install package
  bdist bdist_egg bdist_wheel build sdist: distribution options
  upload: upload to pypi
  upload_*: upload to named pypi service (requires config in ~/.pypirc)
TESTING
  test: execute tests
  tox: execute tests via tox
UTILITY TARGETS
  reformat: reformat code with yapf and commit
  docs -- make sphinx docs
  clean: remove temporary and backup files
  cleaner: remove files and directories that are easily rebuilt
  cleaner: remove files and directories that require more time/network fetches to rebuild
Release History

Release History

0.1.0

This version

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0.0.5

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0.0.4.post14

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0.0.4.post13

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0.0.4.post9

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0.0.4.post8

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0.0.4.post7

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0.0.4.post6

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0.0.4.post5

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0.0.4.post4

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0.0.4.post3

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Donec et mollis dolor. Praesent et diam eget libero egestas mattis sit amet vitae augue. Nam tincidunt congue enim, ut porta lorem lacinia consectetur. Donec ut libero sed arcu vehicula ultricies a non tortor. Lorem ipsum dolor sit amet, consectetur adipiscing elit.

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0.0.4.post2

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0.0.4.post1

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0.0.4

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0.0.3

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0.0.2

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Download Files

Download Files

TODO: Brief introduction on what you do with files - including link to relevant help section.

File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
helix-0.1.0-py2.py3-none-any.whl (11.1 kB) Copy SHA256 Checksum SHA256 py2.py3 Wheel Dec 23, 2016
helix-0.1.0-py3.5.egg (17.0 kB) Copy SHA256 Checksum SHA256 3.5 Egg Dec 23, 2016
helix-0.1.0.tar.gz (70.7 kB) Copy SHA256 Checksum SHA256 Source Dec 23, 2016

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