helmsdeep-to-sentry 0.1.0

A package to query helmsdeep for sentry metadata

HelmsdeepToSentry

The purpose of this package is to query helmsdeep for the relevant metadata and format it to be put into sentry.

Credentials

You must have a .env file with your helmsdeep credentials in the working directory or provide the .env path to the get_database_url function.

Usage

from helmsdeep_to_sentry import *

# Set up the connection to helmsdeep
url = get_database_url(dotenv_path="path/to/.env") # or omit kwarg
session = get_local_session(url)

# Create a query for the experiment of interest
query_str = get_experiment_query_str("Screen Frodo") # or manually write query

# Query helmsdeep
result = query_database(session, query_str)

# Format the metadata for Sentry
result_df = result_to_df(result)
sentry_metadata = result_df_to_metadata(result_df)