hic2mcool
A command-line utility for converting .hic to .mcool files.
Installation
Install via pip:
pip install hic2mcool
Usage
usage: hic2mcool [-h] --hic_file HIC_FILE --mcool_file MCOOL_FILE [--data_type DATA_TYPE] [--normalization NORMALIZATION] [--temp_dir TEMP_DIR]
Convert .hic to .mcool format using hicstraw and cooler.
optional arguments:
-h, --help show this help message and exit
--hic_file HIC_FILE Input .hic file
--mcool_file MCOOL_FILE
Output .mcool file
--data_type DATA_TYPE
Type of data to extract ("observed", "oe"); default: "observed"
--normalization NORMALIZATION
Normalization method: NONE, VC, VC_SQRT, KR, SCALE, etc; default: "NONE"
--temp_dir TEMP_DIR Specify a temporoary directory location, otherwise system default is used.
1 maintainer
Metadata
1 maintainer
Release files for hic2mcool 0.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| hic2mcool-0.0.1.tar.gz | 3.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| hic2mcool-0.0.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 8.8 kB
Release files / hic2mcool-0.0.1.tar.gz
| Download URL | hic2mcool-0.0.1.tar.gz |
|---|---|
| Size | 3.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
029be18722c5b50ad0bb8fd0b429a3cb59c83b9189604d543b95758743b84829
|
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BLAKE2b-256 checksum How to use checksums |
1fce20182a829de6152407ba171268f2030f724ae4ba697058501d4f7d0336a8
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Provenance
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Transparency logRelease files / hic2mcool-0.0.1-py3-none-any.whl
| Download URL | hic2mcool-0.0.1-py3-none-any.whl |
|---|---|
| Size | 5.1 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
4fd380e31490b296d05c92e37ec5ee6f84c2b512cf7036dbb61d8ab4de5ef8bc
|
|
BLAKE2b-256 checksum How to use checksums |
7acb2161cd28a2ff9cc545ba016f1b7eb8debee6e28be2e52cf056067730beee
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.12.9
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Jun 30, 2025.
Transparency log
