hicompass 1.0.0

Hi-Compass: Depth-aware deep learning framework for cell-type-specific chromatin interaction prediction from ATAC-seq

Hi-Compass

Hi-Compass (High-resolution Chromatin Organization Mapping from ATAC-Seq Signals) is a depth-aware multi-modal deep learning framework for predicting cell-type-specific chromatin interactions from ATAC-seq data.

Installation

Important: Hi-Compass requires PyTorch but does not install it automatically, as the correct version depends on your system and CUDA configuration.

1. First, install PyTorch following the instructions at pytorch.org

2. Then install Hi-Compass:

pip install hicompass

3. If you plan to train models (optional):

pip install hicompass[train]

Documentation

Full documentation and tutorials are available at: https://github.com/EndeavourSyc/Hi-Compass

License

MIT License