General purpose stuff to generate and handle Hi-C data in its simplest form.
Project description
hicstuff
A lightweight library that generates and handles Hi-C contact maps in either CSV or instaGRAAL format.
Installation
pip3 install hicstuff
Usage
Contact map generation
yahcp -1 reads_forward.fastq -2 reads_reverse.fastq -f genome.fa [-s size] [-o output_directory] [-e enzyme] [-q quality_min] [--duplicates] [--clean-up]
See yahcp for more information.
Contact map visualization
vizmap -h
Library
See the documentation on reathedocs.
Project details
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