Histology Spatial Topology for Omics Profiling and Inter-section Alignment
Project description
Histopia
Histology Spatial Topology for Omics Profiling and Inter-section Alignment
Histopia is a computational research-software package for serial-section histology and proteomic image analysis. The long-term goal is to support inter-section image alignment, spatial topology reconstruction, protein and marker intensity profiling, and later 3D reconstruction across tissue sections.
This 0.0.1 release is intentionally minimal. It reserves the package name and
establishes a maintainable Python package foundation before migrating research
pipelines from earlier codebases.
Installation
pip install histopia
For local development:
python -m pip install -e ".[dev]"
python -m pytest
python -m ruff check .
Current Status
Histopia is in the planning and scaffolding stage. Production image-analysis APIs are not yet included in this initial release.
License
The license is pending. See LICENSE for the current placeholder.
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file histopia-0.0.1.tar.gz.
File metadata
- Download URL: histopia-0.0.1.tar.gz
- Upload date:
- Size: 4.9 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.10.20
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
f4b4c289823a8a9ad2e31c64927acc84e1ba2a3f20ebf44bb50a54320c34b038
|
|
| MD5 |
969fa04d3d4fa9a204c548369c066cac
|
|
| BLAKE2b-256 |
d181bf24ac23266f177664051879dffe47d2cb49f36eb547f8720197bb182fa2
|
File details
Details for the file histopia-0.0.1-py3-none-any.whl.
File metadata
- Download URL: histopia-0.0.1-py3-none-any.whl
- Upload date:
- Size: 2.5 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.2.0 CPython/3.10.20
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
a0fe8a9ba50d0d6c2a72a560aaff86ee24d64d8c8d247166395dd65cae1065c0
|
|
| MD5 |
472a6fcd41ff1168a7f10120ea6a1226
|
|
| BLAKE2b-256 |
009e86f8482c018bf63b5b304381de0b9d6fbd32f651d0c65f3bffcf074924c1
|
