hora-graph-core 1.0.0

Bio-inspired embedded knowledge graph engine — pure Rust, zero runtime deps

hora-graph-core

Bio-inspired embedded knowledge graph engine in pure Rust.

Your memory never sleeps.

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A knowledge graph that remembers like a brain. Built from neuroscience research on memory formation, activation decay, and sleep consolidation. Zero runtime dependencies. Ships as a single Rust crate with bindings for 5 languages.

Developer Guide · Guide FR · Performance · Releases

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Why hora-graph-core?

Most graph databases store and retrieve. hora-graph-core thinks.

It models how human memory actually works — facts decay over time, frequently accessed memories strengthen, sleep consolidates what matters and forgets what doesn't. This isn't a metaphor: the engine implements peer-reviewed models from cognitive science.

What you get	How it works
Facts that know when they're true	Bi-temporal edges with world-time validity + system-time lineage
Search that combines meaning and text	SIMD vector cosine + BM25+ full-text, fused with Reciprocal Rank Fusion
Memory that strengthens with use	ACT-R base-level learning with Petrov decay approximation
Automatic forgetting of noise	Rac1-inspired dark nodes prune low-activation entities
Sleep-like consolidation	6-step dream cycle: SHY downscaling, replay, CLS transfer, linking
Crash-safe persistence	Page allocator + B+ tree + WAL + mmap with full recovery
One crate, five languages	Rust, Node.js, Python, WebAssembly, C

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Performance

Benchmarked on Apple M3 with Criterion. All numbers are single-threaded.

add_entity .............. 132 ns    Insert 1M entities ...... 1.3 s
get_entity ..............  42 ns    Open 1M from file ....... 94 ms
cosine 384-dim (NEON) ...  32 ns    BFS 3-hop over 100K .... 143 us
BM25 search over 100K .. 668 us    Dream cycle 10K ........  26 ms

What do these numbers mean?

• 42 ns entity lookup — faster than a HashMap miss. The B+ tree stays hot in L1 cache.
• 32 ns cosine similarity — NEON SIMD on ARM, AVX2 on x86. No BLAS dependency.
• 668 us full-text search over 100K docs — inverted index with IDF caching and stop-word elimination.
• 26 ms dream cycle — a full 6-step memory consolidation pass over 10,000 entities, including SHY downscaling, interleaved replay, CLS transfer, and semantic linking.

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Quick Start

Rust

# Cargo.toml
[dependencies]
hora-graph-core = { git = "https://github.com/Vivien83/hora-graph-core.git", tag = "v1.0.0" }

use hora_graph_core::{HoraCore, HoraConfig, TraverseOpts};

fn main() -> hora_graph_core::Result<()> {
    let mut hora = HoraCore::new(HoraConfig::default())?;

    // Create entities
    let alice = hora.add_entity("person", "Alice", None, None)?;
    let bob   = hora.add_entity("person", "Bob",   None, None)?;

    // Add a fact (bi-temporal directed edge)
    hora.add_fact(alice, bob, "knows", "Met at RustConf", Some(0.9))?;

    // Traverse the graph
    let result = hora.traverse(alice, TraverseOpts { depth: 3 })?;
    assert!(result.entity_ids.contains(&bob));

    // BM25 full-text search
    let hits = hora.text_search("Alice", 5)?;
    assert!(!hits.is_empty());

    // Persist to disk
    let mut hora = HoraCore::open("graph.hora", HoraConfig::default())?;
    let _id = hora.add_entity("demo", "test", None, None)?;
    hora.flush()?;

    Ok(())
}

Node.js

const { HoraCore } = require('@hora-engine/graph-core');

const g = HoraCore.newMemory();
const alice = g.addEntity('person', 'Alice');
const bob   = g.addEntity('person', 'Bob');
g.addFact(alice, bob, 'knows', 'Met at RustConf', 0.9);

const result = g.traverse(alice, { depth: 3 });
console.log(`Found ${result.entityIds.length} entities`);

Python

from hora_graph_core import HoraGraph

g = HoraGraph()
alice = g.add_entity("person", "Alice")
bob   = g.add_entity("person", "Bob")
g.add_fact(alice, bob, "knows", "Met at RustConf", 0.9)

result = g.traverse(alice, depth=3)
print(f"Found {len(result['entity_ids'])} entities")

WebAssembly

import init, { HoraWasm } from 'hora-graph-wasm';

await init();
const g = new HoraWasm();
const id = g.addEntity('person', 'Alice');
const result = g.traverse(id, 3);

166 KB gzipped. Memory backend only. Runs in browsers and edge runtimes.

C

#include "hora_graph_core.h"

HoraCore *g = hora_new_memory();
uint64_t alice = hora_add_entity(g, "person", "Alice");
uint64_t bob   = hora_add_entity(g, "person", "Bob");
hora_add_fact(g, alice, bob, "knows", "Met at RustConf", 0.9);
hora_free(g);

Auto-generated header via cbindgen. Static and dynamic linking supported.

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Features

Graph Engine

• Bi-temporal facts — every edge carries valid_at/invalid_at (world-time) and created_at (system-time)
• Graph traversal — BFS with configurable depth, edge filtering, and temporal windowing
• Triple deduplication — name-exact + Jaccard token + cosine embedding similarity
• Transactions — multi-statement begin/commit/rollback with full isolation

Search

• SIMD vector search — NEON (ARM) and AVX2 (x86) cosine similarity, brute-force top-k
• BM25+ full-text — inverted index with stop words, IDF caching, configurable k1/b
• Hybrid search — Reciprocal Rank Fusion combining vector + text results

Bio-Inspired Memory

• ACT-R activation — base-level learning with Petrov decay approximation
• Spreading activation — fan-effect weighted propagation through edges
• Reconsolidation — memory destabilization window (Nader 2000 model)
• Dark nodes — Rac1-inspired active forgetting of low-activation entities
• FSRS scheduling — spaced repetition with retrievability + stability tracking

Dream Cycle (6-step consolidation)

1. SHY downscaling — synaptic homeostasis: scale down all activations
2. Interleaved replay — stochastic replay of recent + older memories
3. CLS transfer — complementary learning systems: consolidate episodic to semantic
4. Memory linking — create new edges between co-activated entities
5. Dark node pruning — remove entities below activation threshold
6. Stats collection — report what was replayed, linked, and pruned

Storage

• Memory — in-process, zero allocation overhead
• Embedded file — page allocator + B+ tree + WAL + mmap, crash recovery, compaction
• SQLite — FTS5 full-text, single-file portability
• PostgreSQL — tsvector search, production-grade durability

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Architecture

hora-graph-core
├── src/
│   ├── lib.rs              HoraCore — unified API (~40 public methods)
│   ├── error.rs            HoraError enum
│   ├── core/
│   │   ├── types.rs        Entity, Edge, Episode, SearchHit
│   │   ├── entity.rs       Entity CRUD
│   │   ├── edge.rs         Bi-temporal edge management
│   │   ├── episode.rs      Episode lifecycle
│   │   └── dedup.rs        Triple deduplication (3 strategies)
│   ├── memory/
│   │   ├── activation.rs   ACT-R base-level learning
│   │   ├── spreading.rs    Fan-effect spreading activation
│   │   ├── reconsolidation.rs  Nader 2000 reconsolidation
│   │   ├── dark_nodes.rs   Rac1 active forgetting
│   │   ├── fsrs.rs         Spaced repetition scheduling
│   │   └── consolidation.rs   6-step dream cycle
│   ├── search/
│   │   ├── vector.rs       SIMD cosine (NEON + AVX2)
│   │   ├── bm25.rs         BM25+ inverted index
│   │   └── hybrid.rs       Reciprocal Rank Fusion
│   └── storage/
│       ├── traits.rs       StorageOps trait (Send)
│       ├── memory.rs       In-memory backend
│       ├── sqlite.rs       SQLite + FTS5
│       ├── pg.rs           PostgreSQL + tsvector
│       └── embedded/
│           ├── page.rs     Page allocator (CRC32, freelist)
│           ├── btree.rs    B+ tree index
│           ├── wal.rs      Write-ahead log
│           ├── mmap.rs     Memory-mapped reader
│           ├── recovery.rs Crash recovery
│           ├── compaction.rs  Log compaction
│           └── tx.rs       Transaction manager
├── bindings/
│   ├── node/       napi-rs v2
│   ├── python/     PyO3 0.22 + maturin
│   ├── wasm/       wasm-bindgen
│   └── c/          cbindgen 0.27
├── benches/        Criterion 0.5 benchmarks
└── tests/          310 tests + conformance suite

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Documentation

Resource	Description
Developer Guide (EN)	Complete API reference with runnable examples — 784 lines, 12 sections
Guide Developpeur (FR)	Reference API complete avec exemples — 765 lignes, 12 sections
Performance Report	Criterion benchmarks, methodology, and analysis

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Building from source

git clone https://github.com/Vivien83/hora-graph-core.git
cd hora-graph-core

# Run all tests
cargo test

# Run benchmarks
cargo bench

# Build with SQLite backend
cargo build --features sqlite

# Build with PostgreSQL backend
cargo build --features postgres

Minimum Rust version: 1.70

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Neuroscience References

The memory subsystem implements models from published research:

Model	Paper	Module
ACT-R base-level learning	Anderson & Lebiere (1998)	memory/activation.rs
Petrov decay approximation	Petrov (2006)	memory/activation.rs
Spreading activation	Anderson (1983)	memory/spreading.rs
Memory reconsolidation	Nader, Schafe & Le Doux (2000)	memory/reconsolidation.rs
Rac1 active forgetting	Shuai et al. (2010)	memory/dark_nodes.rs
FSRS spaced repetition	Ye (2023)	memory/fsrs.rs
Synaptic homeostasis (SHY)	Tononi & Cirelli (2003)	memory/consolidation.rs
Complementary learning systems	McClelland et al. (1995)	memory/consolidation.rs

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License

Licensed under either of

• Apache License, Version 2.0
• MIT License

at your option.

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hora-graph-core is built with care in pure Rust.

17,500+ lines | 310 tests | zero dependencies | zero unsafe