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Customizable tool for easy manual annotation

Project description

Humannotator

Library for conveniently creating simple customizable annotators for manual annotation of your data
Jenia Kim, Lawrence Vriend

Works well with Jupyter notebooks:

Binder

Use case

The humannotator provides an easy way to set up custom annotators. This tool is for you if manual annotation is part of your workflow and you are looking for a solution that is:

  • Lightweight
  • Customizable
  • Easy to set up
  • Integrates with Jupyter/pandas/Python

Quick start

Install the humannotator

Install with conda:

    conda install -c lcvriend humannotator

Or use pip:

    pip install humannotator

Create a simple annotator

  1. Load the data
  2. Define the tasks
  3. Instantiate the annotator
    import pandas as pd
    from humannotator import Annotator

    # load data
    df = pd.read_csv('examples/popcorn_classics.csv', sep=';', index_col=0)

    # set up the annotator
    ratings = [
        'One bag',
        'Two bags',
        'Three bags',
        'Four bags',
        'Five-bagger',
    ]
    annotator = Annotator(df, name='VFA | Rate my popcorn classics')
    annotator.tasks['Bags of popcorn'] = ratings

    # run annotator
    annotator(user='GT')

In Jupyter this gives:

Humannotator

Annotate your data

  • Use the annotator by calling it: annotator().
  • The annotator keeps track of where you were.
  • Highlight phrases with the 'phrases' argument.
  • The annotator stores user (if provided) and timestamp with the annotation.

Access your annotations

  • The annotations are conveniently stored in a pandas DataFrame.
  • Access the annotations with the annotated attribute.
  • Get the indeces of the records without annotation with unannotated.
  • Return the data merged with its annotations with the merged method.

Store your annotations

  • Store the annotator with the save method.
  • Load the annotator with the load method.

Load data

The annotator accepts list, dict, Series and DataFrame objects as data.
The data will be converted to a dataframe internally.

Dataframes

  • By default, the annotator will use the dataframe's index and all columns.
  • Use load_data to easily create a data object if you need more control:
    1. id_col sets the column to be used as index.
    2. item_cols set the column or columns to be displayed.

Define tasks

Tasks can be set up through subscription or with the task_factory.

Setting up tasks with the task factory

Create a task by passing task_factory:

  • the kind of task
  • the name of the task
  • (optionally) an instruction
  • (optionally) a list of dependencies
  • whether it is nullable (default is False)
  • any kwargs necessary (depends on the kind of task)

Typically:

    task_factory(
        'kind',
        'name',
        instruction='instruction',
        dependencies=dependencies,
        nullable=True/False,
        **kwargs,
    )

Passing a dict or list to kind will create a categorical task.
In this case the categories kwarg is ignored.

Setting up tasks through subscription

It is also possible to instantiate an annotator and add tasks through subscription:

    a = Annotator()
    a.tasks['topic'] = ['economy', 'politics', 'media', 'other']
    a.tasks['factual'] = bool, "Is the article factual?", False

To add a task like this, you minimally need to provide the kind of task you are trying to create. Optionally, you can add instruction, nullability, dependencies and any other kwargs (as dictionary). Change the order in which tasks are prompted to the user with the order attribute on tasks.

Available tasks

kind kwargs dtype description
str object String
regex regex object String validated by regex
int Int64 Nullable integer
float float64 Float
bool bool Boolean
category categories CategoricalDtype Categorical variable
date datetime64[ns] Date

Dependencies

Dependencies consist of a condition and a value, that can be passed as tuple:

    ("col1 == 'x'", False)

The condition is a pandas query statement. Before prompting the user for input, the condition is evaluated on the current annotation. If the query evaluates to True then the value will be assigned automatically.

Annotator

Calling the annotator

The annotator detects if it is run from Jupyter. If so, the annotator will render itself in html and css. If not, the annotator will render itself as text. You can annotate a selection of records by passing a list of ids to the annotator call. If you want to reannotate ids that have already been annotated, then set redo to True when calling the annotator.

Instantiating the annotator

arguments

tasks : Task, list of Task objects, Tasks, Annotations or DataFrame

Annotation task(s).
If passed a DataFrame, then the tasks will be inferred from it.
Annotation data in the dataframe will also be initialized.

data : data, list-/dict-like, Series or DataFrame, default None

Data to be annotated.
If `data` is not already a data object,
then it will be passed through `load_data`.
The annotator can be instantiated without data,
but will only work after data is loaded.

user : str, default None

Name of the user.

name : str, default 'HUMANNOTATOR'

Name of the annotator.

save_data : boolean, default False

Set flag to True if you want to store the data with the annotator.
This will ensure that the pickled object, will contain the data.

other parameters

DISPLAY
text_display : boolean, default None

If True will display the annotator in plain text instead of html.

DATA
item_cols : str or list of str, default None

Name(s) of dataframe column(s) to display when annotating.
By default: display all columns.

id_col : str, default None

Name of dataframe column to use as index.
By default: use the dataframe's index.

HIGHLIGHTER
phrases : str, list of str, default None

Phrases to highlight in the display.
The phrases can be regexes.
It also to pass in a dict where:
- the keys are the phrases
- the values are the css styling

escape : boolean, default False

Set escape to True in order to escape the phrases.

flags : int, default 0 (no flags)

Flags to pass through to the re module, e.g. re.IGNORECASE.

TRUNCATER
truncate : boolean, default True

Set to False to not truncate items.

trunc_limit : int, default 32

The number of words beyond which an item will be truncated.

Project details


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