idmtools-cli 3.0.2

CLI for IDM-Tools

idmtools-cli

Table of Contents

• Installing
• Development tips
• Using the CLI
  • Version command
  • Experiment commands for Local Platform
    • Status
    • Delete
  • Simulation commands for Local Platform
  • Status
  • GitRepo commands
    • View
    • Repos
    • Releases
    • Peep
    • Download

Installing

pip install idmtools-cli

Development tips

There is a Makefile file available for most common development tasks. Here is a list of commands

clean       -   Clean up temproary files
lint        -   Lint package and tests
test        -   Run All tests
coverage    -   Run tests and generate coverage report that is shown in browser

On Windows, you can use pymake instead of make

Using the CLI

The CLI requires the workers service to already be running. idmtools

Version command

To determine version of idmtools and related plugins, use the version cli command.

> idmtools version

Example output

emodpy                               Version: 1.3.0                           
  Plugins:
    EMODTask                  
idmtools                             Version: 1.4.0+nightly.0                 
  Plugins:
    CommandTask               
idmtools-cli                         Version: 1.4.0+nightly.0                 
idmtools-models                      Version: 1.4.0+nightly.0                 
  Plugins:
    JSONConfiguredPythonTask  
    JSONConfiguredRTask       
    JSONConfiguredTask        
    PythonTask                
    RTask                     
    ScriptWrapperTask         
    TemplatedScriptTask       
idmtools-platform-comps              Version: 1.4.0+nightly.0                 
  Plugins:
    COMPSPlatform             
    SSMTPlatform                        
idmtools-platform-slurm              Version: 1.0.0+nightly                   
  Plugins:
    SlurmPlatform             

Experiment commands for Local Platform

Status

You can check the status of experiments use the follow command. It will also summarize the simulations under the experiment as a progress bar with green section for completed tasks, yellow for in progress, red for failed, and white for queued.

> idmtools experiment --platform Local status --help

In addition, we used in conjunction with a console that supports auto-highlighting of hyperlinks, you will be able to easily open up the asset directories by clicking on the data path URLs.

You can also perform filtering on the experiments

> idmtools experiment --platform Local status --tag type PythonExperiment
> idmtools experiment --platform Local status --id 8EHU147Z

Delete

You can delete experiments and their child simulations using the following command. Optionally you can also delete the associated data directories as well by using the --data option.

>idmtools experiment --platform Local delete <experiment_id>

Simulation commands for Local Platform

Status

You can check the status of simulations use the follow command.

>idmtools simulation --platform Local status

You can also filter by a either id, experiment id, status, and tags or any combination of the aforementioned

> idmtools simulation --platform Local status --experiment-id EFX6JXBV
> idmtools simulation --platform Local status --id XDT0VMVV
> idmtools simulation --platform Local status --tag a 5 --tag b
> idmtools simulation --platform Local status --experiment-id --status failed

GitRepo commands

View

You can check idmtools available examples. You can use --raw to determine to display in detailed or simplified format

> idmtools gitrepo view

Repos

You can list all public repos for a GitHub owner. You can use --owner to specify an owner and --page for pagination --owner default to 'institutefordiseasemodeling' --page default to 1

> idmtools gitrepo repos

Releases

You can list all releases of a repo by providing --owner and --repo --owner default to 'institutefordiseasemodeling' and --repo default to 'idmtools'

> idmtools gitrepo releasess

Peep

You can list all current files/dirs of a repo folder by providing --url

> idmtools gitrepo peep

Download

You can download files from a public repo to a specified local folder (default to current folder). By default, it will download idmtools examples. You can also download any files from any public repo by using --url (multiple is supported)

> idmtools gitrepo download