iflow-mcp_apertureplus-augmented-codebase-indexer 0.2.0

Augmented Codebase Indexer - Semantic code search with precise line-level location results

Project ACI - Augmented Codebase Indexer

A Python tool for semantic code search with precise line-level location results.

Features

• Semantic code search using embeddings (OpenAI-compatible API)
• Precise line-level location results
• Support for Python, JavaScript/TypeScript, Go, Java, C, C++
• Tree-sitter based AST parsing for accurate code chunking
• Hybrid search (semantic + keyword/grep)
• Qdrant vector database integration
• Incremental indexing for efficient updates
• Multiple interfaces: CLI, HTTP API, MCP (for LLM integration)
• Auto-detection of local timezone for timestamps

Installation

# Using uv (recommended)
uv sync

# Or using pip
pip install -e ".[dev]"

Requirements

• Python 3.10+
• Qdrant (local via Docker auto-start, or cloud via URL + API key)
• OpenAI-compatible embedding API (OpenAI, SiliconFlow, etc.)

Usage

# Index a codebase
aci index /path/to/codebase

# Search for code
aci search "function that handles authentication"

# Search with file path filter
aci search "parse config path:*.py"

# Search excluding certain paths
aci search "database connection -path:tests"

# Check index status
aci status

# Update index incrementally
aci update

# Reset index (drop collection & metadata)
aci reset

# Start interactive shell mode
aci shell

# Start HTTP server (FastAPI)
aci serve --host 0.0.0.0 --port 8000

# Also available via python -m entrypoint
uv run python -m aci serve  # when using uv

# Start MCP server (for LLM integration)
aci-mcp
# or
uv run aci-mcp

Interactive Shell Mode

ACI provides an interactive shell mode that allows you to execute multiple commands without restarting the program each time. This is especially useful for iterative workflows like indexing, searching, and refining queries.

Starting the Shell

aci shell

This launches an interactive REPL (Read-Eval-Print Loop) with:

• Command history (up/down arrows to navigate)
• Tab completion for commands
• Persistent history across sessions

Available Commands

Command	Description
index <path>	Index a directory for semantic search
search <query>	Search the indexed codebase (supports modifiers)
status	Show index status and statistics
update <path>	Incrementally update the index
list	List indexed repositories (use aci list --global to list from the global registry)
reset	Clear the index (requires confirmation)
help or ?	Display available commands
exit, quit, or q	Exit the shell

Example Session

$ aci shell

    _    ____ ___   ____  _          _ _ 
   / \  / ___|_ _| / ___|| |__   ___| | |
  / _ \| |    | |  \___ \| '_ \ / _ \ | |
 / ___ \ |___ | |   ___) | | | |  __/ | |
/_/   \_\____|___| |____/|_| |_|\___|_|_|

Welcome to ACI Interactive Shell
Type 'help' for available commands, 'exit' to quit

aci> index ./src
Indexing ./src...
✓ Indexed 42 files, 156 chunks

aci> search "authentication handler"
Found 3 results:
...

aci> search "config parser path:src/*.py -path:tests"
Found 2 results:
...

aci> exit
Goodbye!

Search Query Modifiers

Search queries support inline modifiers to filter results:

Modifier	Description	Example
path:<pattern>	Include only files matching pattern	path:*.py, path:src/**
file:<pattern>	Alias for path:	file:handlers.py
-path:<pattern>	Exclude files matching pattern	-path:tests
exclude:<pattern>	Alias for -path:	exclude:fixtures

Multiple exclusions can be combined:

aci search "database query -path:tests -path:fixtures"

Artifact Type Filtering

ACI indexes code at multiple granularity levels. You can filter search results by artifact type using the --type / -t option:

Artifact Type	Description
chunk	Code chunks (functions, classes, or fixed-size blocks)
function_summary	Natural language summaries of functions
class_summary	Natural language summaries of classes
file_summary	File-level summaries describing overall purpose

# Search only code chunks
aci search "authentication" --type chunk

# Search only summaries (high-level queries)
aci search "what handles user login" --type function_summary --type class_summary

# Combine multiple types
aci search "config parsing" -t chunk -t file_summary

By default (no --type specified), search returns results from all artifact types.

MCP Integration

ACI supports the Model Context Protocol (MCP), allowing LLMs to directly interact with your codebase indexing and search capabilities.

Quick Start with MCP

1. Configure your MCP client (e.g., Kiro, Claude Desktop, Cursor):

{
  "mcpServers": {
    "aci": {
      "command": "uv",
      "args": ["run", "aci-mcp"],
      "cwd": "/path/to/your/project"
    }
  }
}

2. Ensure .env exists in the working directory with required settings (see .env.example)

3. Use natural language to interact with your codebase:

   • "Index the current directory"
   • "Search for authentication functions"
   • "Show me the index status"

Available MCP Tools

Tool	Description
index_codebase	Index a directory for semantic search
search_code	Search code using natural language queries
get_index_status	Get indexing statistics and health info
update_index	Incrementally update the index
list_indexed_repos	List all indexed repositories

Testing MCP

# Test with MCP Inspector (Web UI)
npx @modelcontextprotocol/inspector uv run aci-mcp

# Test via Python script
uv run python tests/test_mcp_call/test_stdio.py

# Test indexing
uv run python tests/test_mcp_call/test_index_codebase.py

Debug Mode

Set ACI_ENV=development in .env to enable debug logging:

ACI_ENV=development

Debug messages are printed to stderr and visible in MCP Inspector's notifications.

Note: MCP uses single-threaded indexing for stdio compatibility. For faster indexing of large codebases, use the CLI: uv run aci index .

Security

ACI includes built-in security protections:

• System directory protection: Indexing system directories (/etc, /var, C:\Windows, etc.) is blocked across all interfaces (CLI, HTTP, MCP)
• Sensitive file denylist: The following files are automatically excluded from indexing regardless of configuration:
  • SSH keys and directories (.ssh, id_rsa, id_ed25519, etc.)
  • GPG directories (.gnupg)
  • Certificates and private keys (*.pem, *.key, *.p12, *.pfx, *.crt)
  • Environment files (.env, .env.*)
  • Credential files (.netrc, .npmrc, .pypirc)

These protections cannot be overridden by user configuration.

Configuration

Configuration is done via .env file or environment variables. Copy .env.example to .env and fill in your settings:

cp .env.example .env

Key settings:

Variable	Description	Required
ACI_EMBEDDING_API_KEY	API key for embedding service	Yes
ACI_EMBEDDING_API_URL	Embedding API endpoint	No (defaults to OpenAI)
ACI_EMBEDDING_MODEL	Model name	No
ACI_VECTOR_STORE_URL	Qdrant base URL (takes precedence over host/port)	No
ACI_VECTOR_STORE_API_KEY	Qdrant API key (for Qdrant Cloud)	No
ACI_VECTOR_STORE_HOST	Qdrant host	No (defaults to localhost)
ACI_VECTOR_STORE_PORT	Qdrant port	No (defaults to 6333)
ACI_SERVER_HOST	HTTP server host	No (defaults to 0.0.0.0)
ACI_SERVER_PORT	HTTP server port	No (defaults to 8000)
ACI_ENV	Environment (development/production)	No

See .env.example for the full list of options.

The CLI and HTTP server will attempt to auto-start a local Qdrant Docker container only when targeting a local endpoint (localhost / 127.0.0.1). For cloud Qdrant (ACI_VECTOR_STORE_URL), it will not run Docker.