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Jupyter extension for embedding the igv.js genome visualization in a notebook

Project description

igv Jupyter Extension

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igv-jupyter is tool for JupyterLab which wraps igv.js and integrates with g2nb. With this tool you can render igv.js in a cell and call its API from a user-friendly web form in the notebook. Track data can be loaded from local or remote URLs, or supplied directly.

For programmatic access to igv.js in a Jupyter notebook, see igv-notebook.

Installation

Requirements:

  • python >= 3.6.4
  • jupyterlab >= 3.0
pip install igv-jupyter

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