ihep-utilities 0.0.3

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Description

This project has utilities meant to be used in IHEP. They are site-specific and not useful for anyone outside IHEP.

Submit jobs from lists of commands

One can submit jobs to the cluster by doing:

job_run_commands -f jobs.txt -e my_env

where jobs.txt is a file with the commands to be ran, one per job, e.g.:

run_calculation -i 0
run_calculation -i 1
run_calculation -i 2
run_calculation -i 3

would run in parallel run_calculation for different arguments. The flag -e specifies the virtual environment where this needs to be executed.

Modify memory from jobs that are held

To modify the amount of memory used by the held jobs and release them do:

jmanager -m 8000 -t 0

-t 1 will do a test run.

Job sumission

To submit arrays of jobs to HTCondor in IHEP do:

from ihep_utilities import JobSubmitter

d_job = {
    'j1' : ['echo 1', 'echo 2', 'echo 3'],
    'j2' : ['echo a', 'echo b', 'echo c'],
}

sbt = JobSubmitter(jobs=d_job, environment='None')
sbt.run(skip_submit=False)

Where

• The j1, j2, etc can be replaced with the user's commands
• environment is the user's conda environment where this will run
• skip_submit can be True for dry runs.

The outputs will go to:

/publicfs/ucas/user/campoverde/Jobs/run_commands

but this can be changed with JobsSubmitter._log_root