imaging-server-kit 0.1.0

Convert image processing functions to GUIs, FastAPI servers, and more.

🪐 Imaging Server Kit

Turn Python-based image processing workflows into algorithms that gain extra functionalities.

• Turn your algorithms into web servers and run computations from QuPath, Napari, or Python via HTTP requests.

https://github.com/user-attachments/assets/36bda69d-996e-4240-9a53-7e76d9ea3894

• Generate dock widgets to run your algorithms interactively in Napari.

https://github.com/user-attachments/assets/1ff572f7-f159-4f5a-afd4-7a157de3d9f8

• Run your algorithms tile-by-tile on the input data.

https://github.com/user-attachments/assets/47c2f734-5683-49d9-8aea-388c3a2bc16d

• Stream results to inspect them in real-time.

https://github.com/user-attachments/assets/a3f69a9f-fb68-4580-a804-6c57d5807b9a

Installation

Install the imaging-server-kit package with pip:

pip install imaging-server-kit

or clone the project and install the development version:

git clone https://github.com/Imaging-Server-Kit/imaging-server-kit.git
cd imaging-server-kit
pip install -e .

Getting started

The documentation is available on this page.

Contributing

Contributions are very welcome.

License

This software is distributed under the terms of the BSD-3 license.

Issues

If you encounter any problems, please file an issue along with a detailed description.

Citing

If you use the Imaging Server Kit in the context of scientific publication, you can cite it as below.

BibTeX:

@software{mallory_wittwer_2025_15673152,
  author       = {Mallory Wittwer and Edward Andò and Maud Barthélemy and Florian Aymanns},
  title        = {Imaging-Server-Kit/imaging-server-kit: v0.0.14},
  url          = {https://doi.org/10.5281/zenodo.15673152},
  doi          = {10.5281/zenodo.15673152},
  version      = {v0.0.14},
  year         = 2025,
}

Acknowledgements

We thank the Personalized Health and Related Technologies for funding this project.