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Imaris Convert

一个用于将图像转换为 Imaris 格式的 Python 工具包。

安装

pip install imaris-convert

使用方法

命令行使用

# 基本用法
imaris-convert input.tiff

# 指定输出目录
imaris-convert input.tiff -o /path/to/output/directory

Python API 使用

# 转换图像文件(.tiff)
from imaris_convert import tiff_to_imaris

tif_path = r'your_tiff_path'
tiff_to_imaris(tiff_path=tif_path)
# tiff_to_imaris(tiff_path=tif_path,out_path=out_path)

# 转换 np.ndarray 到 ims
from imaris_convert import numpy_to_imaris
import numpy as np

your_np_data = np.ones((100,100,100),dtype=np.uint16)
numpy_to_imaris(np_data=your_np_data,out_path='your_save_path')

依赖项

  • Python >= 3.6
  • numpy
  • tifffile
  • tqdm

许可证

MIT License

Metadata

Release files for imaris-convert 1.0.1

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