IMC to Zarr converter
Convert IMC scan dataset to Zarr.
Install
pip install imc2zarr
Requirements
- click
- numpy
- pandas
- python_dateutil
- xarray
Usage
Arguments
- input_path:
- the root folder of the IMC scan containing a single mcd file and/or other related files: XML meta & scan data in text format
- or, the path of an mcd file
- output_path: the location where to store the converted output in Zarr format
From Python script
from imc2zarr import imc2zarr
imc2zarr(input_path, output_path)
From the command line
imc2zarr input_path output_path
Release files for imc2zarr 0.2.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| imc2zarr-0.2.0.tar.gz | 13.4 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| imc2zarr-0.2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 28.9 kB
Release files / imc2zarr-0.2.0.tar.gz
| Download URL | imc2zarr-0.2.0.tar.gz |
|---|---|
| Size | 13.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/4.0.1 CPython/3.11.0
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Release files / imc2zarr-0.2.0-py3-none-any.whl
| Download URL | imc2zarr-0.2.0-py3-none-any.whl |
|---|---|
| Size | 15.5 kB |
| Tags | Python 3 |
|
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No |
| Uploaded via |
twine/4.0.1 CPython/3.11.0
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Security for imc2zarr 0.2.0
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