Tools to handle Fluidigm IMC data
Project description
imctools
An IMC file conversion tool that aims to convert IMC raw data files (.mcd, .txt) into an intermediary ome.tiff, containing all the relevant metadata. Further it contains tools to generate simpler TIFF files that can be directly be used as input files for e.g. CellProfiller, Ilastik, Fiji etc.
Documentation is available at https://bodenmillergroup.github.io/imctools
Requirements
This package requires Python 3.7 or later.
Using virtual environments is strongly recommended.
Installation
Install imctools and its dependencies with:
pip install imctools
Usage
See Quickstart
Authors
Created and maintained by Vito Zanotelli vito.zanotelli@uzh.ch and Anton Rau anton.rau@uzh.ch
Contributing
Changelog
License
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file imctools-2.1.8.tar.gz.
File metadata
- Download URL: imctools-2.1.8.tar.gz
- Upload date:
- Size: 27.5 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.1.6 CPython/3.8.10 Linux/5.11.0-34-generic
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
add04970a8bc2565349cd4e9159e6fca43cfc85e98d70ae1d38a0c14653c580d
|
|
| MD5 |
9a916e909b1aecebf2b433005943e6c3
|
|
| BLAKE2b-256 |
d05be24b46a2158a6c91137d110b833a83c4f11292746252d0ee89913d2f6c7b
|
File details
Details for the file imctools-2.1.8-py3-none-any.whl.
File metadata
- Download URL: imctools-2.1.8-py3-none-any.whl
- Upload date:
- Size: 41.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: poetry/1.1.6 CPython/3.8.10 Linux/5.11.0-34-generic
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
e247e86c74fd7cce260d19f55f6beab1088038cb4f6e49e5eb9b518aa79db578
|
|
| MD5 |
f4cc865ac192bf175ce6010e761dc182
|
|
| BLAKE2b-256 |
9d686883aa3f051e961019495c234ef73e40c5983c6a4d5999b9ce33ffc61a8d
|
