imctools
An IMC file conversion tool that aims to convert IMC raw data files (.mcd, .txt) into an intermediary ome.tiff, containing all the relevant metadata. Further it contains tools to generate simpler TIFF files that can be directly be used as input files for e.g. CellProfiller, Ilastik, Fiji etc.
Documentation is available at https://bodenmillergroup.github.io/imctools
Requirements
This package requires Python 3.7 or later.
Using virtual environments is strongly recommended.
Installation
Install imctools and its dependencies with:
pip install imctools
Usage
See Quickstart
Authors
Created and maintained by Vito Zanotelli vito.zanotelli@uzh.ch and Anton Rau anton.rau@uzh.ch
Contributing
Changelog
License
1 maintainer
Release files for imctools 2.1.8
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| imctools-2.1.8.tar.gz | 27.5 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| imctools-2.1.8-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 68.8 kB
Release files / imctools-2.1.8.tar.gz
| Download URL | imctools-2.1.8.tar.gz |
|---|---|
| Size | 27.5 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.1.6 CPython/3.8.10 Linux/5.11.0-34-generic
|
Release files / imctools-2.1.8-py3-none-any.whl
| Download URL | imctools-2.1.8-py3-none-any.whl |
|---|---|
| Size | 41.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.1.6 CPython/3.8.10 Linux/5.11.0-34-generic
|
