A python module adding BigDataViewer functions to imglyb.
Project description
imglyb-bdv
imglyb-bdv
extends imglyb with convenience
methods and structures from BigDataViewer
If you are interested in using imglyb-bdv
, have a look at the examples
folder
and extend the examples as needed!
Installation
Prerequisites
imglyb-bdv
has been tested on Linux, macOS, and Windows.
The following tools are required:
- Python 3
- Java 8 or 11 JDK (JRE is not enough)
- Apache Maven
If you use conda, these will be installed for you.
Installing with conda
conda install -c conda-forge imglyb-bdv
Installing with pip
First, install the prerequisites above. Then run:
pip install imglyb-bdv
It is recommended to do this from inside a virtualenv or conda environment, rather than system-wide.
Installing from source
First, install the prerequisites above. Then run:
git clone git://github.com/imglib/imglyb-bdv
cd imglyb-bdv
pip install -e .
It is recommended to do this from inside a virtualenv or conda environment, rather than system-wide.
Usage
It is suggested to follow and extend the examples in the examples
folder
according to your needs. Note that the examples have additional dependencies
(hdf5
and/or dask
).
Or, for a higher-level way to use imglyb
, check out
pyimagej.
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