impynb 0.1.7

Import Jupyter notebooks as Python modules

impynb

Import Jupyter notebooks as Python modules!

Installation

pip install impynb

Usage

Assume your project looks like this:

my-project/
  my_project/
    __init__.py
    my_notebook.ipynb
    my_module.py
    util.py
  pyproject.toml

You can import notebooks from Python modules:

# my_module.py
import impynb
from .my_notebook import some_function  # <-- import notebook
some_function(3, 4)

Importing local Python modules from notebooks also works:

# cell in my_notebook.ipynb
import impynb
from .util import add_two_numbers  # <-- import local Python module

def some_function(a, b):
  return add_two_numbers(a, b)

Features

• Understands package initializers: Module initializers (__init__.py) can also be written as Python notebooks (__init__.ipynb). If a package contains both files, only __init__.py will be used and __init__.ipynb is ignored for consistency reasons.

  # my-package/my_package/my_module/__init__.ipynb (first cell)
  variable = 42
  
  # my-package/my_package/main.py
  import impynb
  from . import my_module
  my_module.variable  # 42
  

• Async code: Notebook cells containing async code will be executed in the default event loop:

  # my_notebook.ipynb
  from asyncio import sleep
  await sleep(0.1)
  variable = 42
  
  # my_module.py
  import impynb
  from . import my_notebook
  my_notebook.variable  # 42
  

  The event loop can be configured (see below).
• Exception handling: Exceptions thrown in notebooks are displayed correctly in the stack trace

  # my_notebook.ipynb (first cell)
  raise NotImplementedError()
  
  # my_module.py
  import impynb
  from .my_notebook import *
  # raises an exception containing the problematic cell:
  #
  #   File ".../my_module.py", line 2
  #     from .my_notebook import *
  #     ^^^^^^^^^^^^^^^^^^^^^^^^^^
  #   ...
  #   File ".../my_notebook.ipynb[cell-0]", line 1, in <module>
  #     raise NotImplementedError()
  

• Code Cell Filtering: Notebook cells marked with a comment #!ignore at the top will be skipped when importing the notebook.

  #!ignore
  # this code will not run when importing the notebook
  some_heavy_computation()
  

• Advanced configuration: The module can be configured to use different markers for ignorable cells or a custom event loop (see below).

Advanced configuration

The package can be configured using the init method:

import impynb

impynb.init(
    skip_cell_tags=["test"],
    # ...
)

# configuration only applies for imports *after* init() call
from .my_notebook import nice_function

Provide a notebook path

If you like to use impynb with a tool that gives no information about the path to the current notebook file (e.g. papermill), then you need to call init() at the start of the notebook and pass the notebook path as argument:

# my_notebook.ipynb (first cell)
import os
import impynb
impynb.init(os.environ.get("NOTEBOOK_PATH"))

# my_module.py
import os
import papermill as pm

pm.execute_notebook(
    "my_notebook.ipynb",
    "result_file.ipynb",
    kernel_name="python3",
    parameters={"NOTEBOOK_PATH": os.path.abspath(".")},
)

Skip tagged cells

Cells in Jupyter notebooks can be tagged. You can configure impynb to skip executing cells having a specific tag on them:

import impynb
impynb.init(skip_cell_tags=["test"])

Custom event loop

Executing async code will run in the default event loop if not specified otherwise. However, impynb can be configured to use a different event loop:

import asyncio
import impynb

my_event_loop = asyncio.new_event_loop()
impynb.init(event_loop=my_event_loop)

# async cells will be run in the custom event loop
from . import my_notebook

Context manager

The package provides a context manager for a temporary reconfiguration of import settings:

import impynb

with impynb.configure(skip_cell_tags=["test"]):
  # will ignore cells tagged as "test"
  from . import my_notebook

# will not ignore cells anymore
import . from my_other_notebook

All arguments of the impynb.init method (except notebook_path) are available in impynb.configure.

Compatibility

impynb was tested on the following Jupyter platforms:

• ✅ VSCode: via __vsc_ipynb_file__ variable (source)
• ✅ Jupyter Notebooks: via JPY_SESSION_NAME environment variable or __session__ as fallback (source)
• ✅ Jupyter Lab: same as Jupyter Notebooks
• ✅ Google Colab: creates a virtual Python module with a name based on the COLAB_NOTEBOOK_ID env variable in the working directory (usually /content). Since a valid Python module requires an __init__.py (or __init__.ipynb) file, you need to create one of these files in the working directory to import modules from there.
• ⚪ Papermill: provides no indication about the current notebook name or path (as far as I know) and the user needs to provide this manually (see above)

License

This project is licensed under the BSD 3-Clause "New" or "Revised" License. See the LICENSE file for details.