infomap 2.13.0

Infomap network clustering algorithm

Infomap

Infomap is a network clustering algorithm based on the Map equation. This repository contains the native CLI, the Python package, the R package, the JavaScript browser worker and Node.js package, the Docker images, the tutorial notebooks, and the source for the published Python documentation.

Start with mapequation.org/infomap/ for the user guide, the Infomap Python API for Python examples and tutorial notebooks, and CHANGELOG.md for release notes.

For contributing, security reporting, and maintainer workflows, see CONTRIBUTING.md, SECURITY.md, BUILD.md, ARCHITECTURE.md, and AGENTS.md.

Install

Python package

Install from PyPI:

pip install infomap

Install optional integrations for common Python graph and analysis workflows:

pip install "infomap[networkx]"
pip install "infomap[igraph]"
pip install "infomap[pandas]"

Upgrades use the usual pip flow:

pip install --upgrade infomap

The package also installs the infomap CLI entry point. The Python API reference lives at Infomap Python API.

Quick start with Python:

import networkx as nx
import infomap

graph = nx.karate_club_graph()
communities = infomap.find_communities(
    graph,
    seed=123,
    num_trials=20,
)

print(communities)

For Jupyter, start with the quickstart notebook. It shows the notebook-native Infomap result summary, dataframe inspection, a copyable static network partition helper, and export paths for further analysis.

For direct control over Infomap-specific options and result access:

from infomap import Infomap, InfomapOptions

options = InfomapOptions(two_level=True, silent=True, num_trials=20, seed=123)
im = Infomap.from_options(options)
im.add_link(0, 1)
im.add_link(1, 2)
im.run()

print(im.num_top_modules, im.codelength)
print(im.to_dataframe(columns=["node_id", "module_id", "flow"], index="node_id"))

R package

Pre-built binaries are published on r-universe; this is the recommended path:

install.packages(
  "infomap",
  repos = c("https://mapequation.r-universe.dev", "https://cloud.r-project.org")
)

Quick start with R:

library(infomap)

im <- Infomap(silent = TRUE, two_level = TRUE, num_trials = 20)
im$add_link(0, 1)
im$add_link(1, 2)
im$run()

print(im$num_top_modules)
print(im$codelength)

See ?Infomap for the user-facing constructor plus the InfomapClass method and active-binding reference. The R-specific source README lives at interfaces/R/infomap/README.md.

Homebrew CLI

If you want the native CLI without the Python package, install the tap and formula with:

brew tap mapequation/infomap
brew install infomap

Or install directly in one command:

brew install mapequation/infomap/infomap

Upgrade the CLI with the normal Homebrew flow:

brew upgrade infomap

The Homebrew formula installs Bash and Zsh completion files into Homebrew’s standard completion directories.

JavaScript package

The package is published on NPM and provides a browser web worker, a Node.js module, and an infomap command line tool:

npm install @mapequation/infomap

Quick start in Node.js with the @mapequation/infomap/node entry point:

import { run } from "@mapequation/infomap/node";

const network = "0 1\n0 2\n0 3\n1 2\n3 4\n3 5\n4 5";
const result = await run(network, { args: ["-o", "tree,json", "-2"] });

console.log(result.json.codelength);
console.log(result.tree);

Installing the package also provides an infomap command that behaves like the native binary:

npx @mapequation/infomap network.net . --tree

Browser worker and React usage are documented on the NPM package page.

Docker

Multi-arch images are published to GHCR for linux/amd64 and linux/arm64:

• ghcr.io/mapequation/infomap:latest

• ghcr.io/mapequation/infomap:X.Y.Z

• ghcr.io/mapequation/infomap:notebook

• ghcr.io/mapequation/infomap:notebook-X.Y.Z

Run the CLI image with:

docker run -it --rm \
    -v "$(pwd)":/data \
    ghcr.io/mapequation/infomap:latest \
    [infomap arguments]

Start the notebook image with:

docker run --rm \
    -p 8888:8888 \
    ghcr.io/mapequation/infomap:notebook \
    start.sh jupyter lab

The notebook image includes the survey companion notebooks from examples/notebooks and opens in that workspace by default. To keep local copies or outputs, mount a host directory as a separate workspace path:

docker run --rm \
    -v "$(pwd)":/home/jovyan/work/local \
    -p 8888:8888 \
    ghcr.io/mapequation/infomap:notebook \
    start.sh jupyter lab

The Dockerfiles in this repository are also smoke-tested in CI and can be built locally:

docker build -f docker/infomap.Dockerfile -t infomap:local .
docker build -f docker/notebook.Dockerfile -t infomap:notebook-local .

Or use the local Compose file:

docker compose run --rm infomap

Build from source

Building locally requires a working gcc or clang toolchain.

git clone [e-mail]:mapequation/infomap.git
cd infomap
make build-native

On macOS, the default OpenMP-enabled build may require Homebrew libomp. If OpenMP is unavailable, use:

make build-native OPENMP=0

This creates the Infomap binary in the repository root. Show the available CLI options with:

./Infomap --help

Install shell completion scripts manually with:

mkdir -p ~/.zfunc
./Infomap --completion zsh > ~/.zfunc/_Infomap

mkdir -p ~/.local/share/bash-completion/completions
./Infomap --completion bash > ~/.local/share/bash-completion/completions/infomap

For Zsh, make sure ~/.zfunc is in fpath and compinit is loaded from ~/.zshrc. For Bash, make sure bash-completion is sourced from ~/.bashrc.

See BUILD.md for platform-specific maintainer build details.

Maintainers should use:

• BUILD.md for local build and verification commands

• RELEASING.md for the release flow

• ARCHITECTURE.md for ownership and source-of-truth rules

• AGENTS.md for repo-local maintenance guidance

• CONTRIBUTING.md for pull request and contributor guidance

• SECURITY.md for vulnerability reporting

Agent skill

This repository includes an Infomap agent skill in skills/infomap/ for reproducible CLI, Python, R, and notebook research workflows.

Feedback

Usage questions and setup help belong in GitHub Discussions. Bug reports and feature requests belong in GitHub issues.

Authors

Daniel Edler, Anton Holmgren, Martin Rosvall

For contact information, see mapequation.org/about.html.

Terms of use

Infomap is released under a dual licence.

The code is available under the GNU General Public License version 3 or any later version; see LICENSE_GPLv3.txt. For a non-copyleft license, please contact us.