integrate_module 0.2.15

Localized probabilistic data integration

INTEGRATE Python Module

This repository holds the INTEGRATE Python module

Installation

Assuming you allready have python 3.10 installed

pip install -i https://test.pypi.org/simple/ integrate_module

On Windows this will also install the python wrapper for the ga-aem (1D EM forward modeling - GPL v2 code) --> ga-aem-forward-win

PIP (from pypi)

# Install python3 venv
sudo apt install python3-venv

# Create virtual environment
python3 -m venv ~/integrate
source ~/integrate/bin/activate
pip install --upgrade pip

# Install integrate module
pip install -i https://test.pypi.org/simple/ integrate_module

PIP (from source)

# Install python3 venv
sudo apt install python3-venv

# Create virtual environment
python3 -m venv ~/integrate
source ~/integrate/bin/activate
pip install --upgrade pip

# Install integrate module
cd path/to/integrate module
pip install -e .

Conda + PIP (from pypi)

Create a Conda environment (called integrate) and install the required modules, using

conda create --name integrate python=3.10 numpy pandas matplotlib scipy tqdm requests h5py psutil
conda activate integrate
pip install -i https://test.pypi.org/simple/ integrate_module

Conda + PIP (from source)

Create a Conda environment (called integrate) and install the required modules, using

conda create --name integrate python=3.10 numpy pandas matplotlib scipy tqdm requests h5py psutil
conda activate integrate
pip install -e .

GA-AEM

In order to use GA-AEM for forward EM modeling, the 'gatdaem1d' Python module must be installed. Follow instructions at https://github.com/GeoscienceAustralia/ga-aem or use the information below.

pypi paackage for windows

In Windows the ga-aem-forward-win package will be autoamtically installed that provides access to the GA-AEM forward code. It can be installed manually using

pip install ga-aem-forward-win

Pre-Compiled Python module in Windows

Download pre-compiled version of GA-AEM for windows through the latest release from https://github.com/GeoscienceAustralia/ga-aem/releases as GA-AEM.zip

Download precompiled FFTW3 windows dlls from https://www.fftw.org/install/windows.html as fftw-3.3.5-dll64.zip

unzip GA-AEM.zip to get GA-AEM

unzip fftw-3.3.5-dll64.zip to get fftw-3.3.5-dll64

Copy fftw-3.3.5-dll64/*.dll to GA-AEM/python/gatdaem1d/

cp fftw-3.3.5-dll64/*.dll GA-AEM/python/gatdaem1d/

Install the python gatdaem1d module

cd GA-AEM/python/
pip install -e .

# test the installaion
cd examples
python skytem_example.py

Compile ga-aem Python module in Ubuntu/Linux

A script that downloads and install GA-AEM is located in 'scripts/cmake_build_script_ubuntu_gatdaem1d.sh'. Be sure to use the appropriate Python environment and then run

sh scripts/cmake_build_script_ubuntu_gatdaem1d.sh
cd ga-aem/install-ubuntu/python
pip install .

Compile ga-aem Python module in OSX/Homebrew

First install homebrew, then run

sh ./scripts/cmake_build_script_homebrew_gatdaem1d.sh
cd ga-aem/install-homebrew/python
pip install .

Development

The main branch should be the most stable, and updates, less frequent, but with larger changes.

The develop branch contains the current development code and may be updated frequently, and some functions and examples may be broken.