Intronator
A Python package for intron analysis with splice site prediction capabilities.
Features
- SpliceAI integration for splice site prediction
- Pangolin model support for enhanced predictions
- seqmat compatibility for sequence analysis
- Python 3.10+ support
Installation
Basic Installation
pip install intronator
External Dependencies
The package requires SpliceAI and Pangolin models which must be installed separately:
SpliceAI
pip install spliceai
Pangolin
pip install git+https://github.com/tkzeng/Pangolin.git
Complete Installation (with external dependencies)
pip install intronator[external]
Quick Start
import intronator
# Check package status
print(intronator.hello_intronator())
print(intronator.check_seqmat_compatibility())
print(intronator.get_model_status())
Requirements
- Python >= 3.10
- seqmat
- torch >= 1.10.0
- tensorflow >= 2.8.0
- SpliceAI (install separately)
- Pangolin (install separately)
Notes
- SpliceAI and Pangolin models will be automatically loaded when the package is imported
- Model loading may take some time on first import
- GPU acceleration is automatically detected and used when available
1 maintainer
Metadata
1 maintainer
Release files for intronator 0.2.1
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| intronator-0.2.1.tar.gz | 25.8 kB | Without provenance | Details for intronator-0.2.1.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| intronator-0.2.1-py3-none-any.whl | Python 3 | none | any | Details for intronator-0.2.1-py3-none-any.whl |
Total release size: 49.8 kB
Release files / intronator-0.2.1.tar.gz
| Download URL | intronator-0.2.1.tar.gz |
|---|---|
| Size | 25.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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No |
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twine/6.1.0 CPython/3.11.10
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Release files / intronator-0.2.1-py3-none-any.whl
| Download URL | intronator-0.2.1-py3-none-any.whl |
|---|---|
| Size | 24.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.11.10
|
Security for intronator 0.2.1
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