Collection of tasks for I/O. Designed to be used both in Prefect workflows and as modular, useful pieces of code.
Installation
The collection can be installed using:
pip install io-collection
Note that loading and saving images requires additional dependencies. Install these using:
pip install 'io-collection[images]'
We recommend using Poetry to manage and install dependencies. To install into your Poetry project, use:
poetry add io-collection
To include additional dependencies for loading and saving images:
poetry add 'io-collection[images]'
Usage
Prefect workflows
All tasks in this collection are wrapped in a Prefect @task decorator, and can be used directly in a Prefect @flow.
Running tasks within a Prefect flow enables you to take advantage of features such as automatically retrying failed tasks, monitoring workflow states, running tasks concurrently, deploying and scheduling flows, and more.
from prefect import flow
from io_collection.<module_name> import <task_name>
@flow
def run_flow():
<task_name>()
if __name__ == "__main__":
run_flow()
See cell-abm-pipeline for examples of using tasks from different collections to build a pipeline for simulating and analyzing agent-based model data.
Individual tasks
Not all use cases require a full workflow.
Tasks in this collection can be used without the Prefect @task decorator by simply importing directly from the module:
from io_collection.<module_name>.<task_name> import <task_name>
def main():
<task_name>()
if __name__ == "__main__":
main()
or using the .fn() method:
from io_collection.<module_name> import <task_name>
def main():
<task_name>.fn()
if __name__ == "__main__":
main()
1 maintainer
Metadata
1 maintainer
Release files for io-collection 1.1.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| io_collection-1.1.0.tar.gz | 12.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| io_collection-1.1.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 36.8 kB
Release files / io_collection-1.1.0.tar.gz
| Download URL | io_collection-1.1.0.tar.gz |
|---|---|
| Size | 12.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/5.1.1 CPython/3.12.6
|
Release files / io_collection-1.1.0-py3-none-any.whl
| Download URL | io_collection-1.1.0-py3-none-any.whl |
|---|---|
| Size | 24.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/5.1.1 CPython/3.12.6
|
