ACF Calculation from Experimental Data, Plotting and Fitting Used by FCS and RICS Methods

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  • License: GNU General Public License v3 or later (GPLv3+) (GPLv3)
  • Author: IOCBio team
  • Tags FCS , RICS , fluorescence , correlation , spectroscopy , microscopy , autocorrelation
  • Requires: Python >=3.11
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IOCBIO FCS: A Unified Platform for FCS and RICS Analysis with Advanced Statistical Inference

IOCBIO FCS is an open-source Python-based platform for analyzing fluorescence intensity traces and images obtained from Fluorescence Correlation Spectroscopy (FCS) and Raster Image Correlation Spectroscopy (RICS) experiments.

This software provides a complete workflow from data visualization and autocorrelation calculation to model fitting and parameter estimation.

The software package includes Python libraries and command-line interface tools that enable users to:

  • Visualize individual fluorescence trace/image and averaged traces/images across multiple measurements.
  • Calculate the autocorrelation function (ACF) for both FCS traces and RICS images using GPU/CPU acceleration.
  • Fit ACF data with flexible diffusion models to estimate diffusion coefficients and other parameters, using both nonlinear least-squares (NLS) and Bayesian approaches.
  • Plot results including fitted ACF data, pre-analysis scatter plots, posterior diagnostics, angular dependence plots in RICS, and spatially resolved parameter maps from sector analysis.

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Copyright (C) 2024-2025 Laboratory of Systems Biology, Department of Cybernetics, School of Science, Tallinn University of Technology.

Contact: Marko Vendelin (markov@sysbio.ioc.ee)

Software license: GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. See LICENSE for details.

Authors: Software authors are listed in AUTHORS

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  • License: GNU General Public License v3 or later (GPLv3+) (GPLv3)
  • Author: IOCBio team
  • Tags FCS , RICS , fluorescence , correlation , spectroscopy , microscopy , autocorrelation
  • Requires: Python >=3.11
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1.1.0

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1.0.2

1.0.1

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