IPR
This repository is part of the Platform for Oncogenomic Reporting and Interpretation (PORI).
This python tool takes in variant inputs as tab-delimited files and annotates them using GraphKB. The resulting output is uploaded to IPR as a report. Additional report content such as images and metadata can be passed to be included in the report upload.
For documentation on how to create reports using this adaptor, see the main documentation site for the platform.
Getting Started
Install (For developers)
clone this repository
git clone https://github.com/bcgsc/pori_ipr_python.git
cd pori_ipr_python
create a virtual environment
python3 -m venv venv
source venv/bin/activate
install the package and its development dependencies
pip install -U pip setuptools
pip install -e .[dev]
Run the tests
pytest tests
Documentation
The user documentation for this tool is hosted with the main documentation site.
Developers: Any updates to this tool should be edited and reflected in the main site documentation as well.
2 maintainers
Metadata
2 maintainers
Release files for ipr 3.13.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| ipr-3.13.0.tar.gz | 54.8 kB | Without provenance | Details for ipr-3.13.0.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| ipr-3.13.0-py3-none-any.whl | Python 3 | none | any | Details for ipr-3.13.0-py3-none-any.whl |
Total release size: 115.9 kB
Release files / ipr-3.13.0.tar.gz
| Download URL | ipr-3.13.0.tar.gz |
|---|---|
| Size | 54.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
6ea67de2faeec895d09d442a0fecdbd3834dc85492951699040b3bc679bbf62c
|
|
BLAKE2b-256 checksum How to use checksums |
94642a994294af554a8f8768471473769c18e0882a65d23e435607317de6863d
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.12.2
|
Release files / ipr-3.13.0-py3-none-any.whl
| Download URL | ipr-3.13.0-py3-none-any.whl |
|---|---|
| Size | 61.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
1e576d700d8f32279f11057cc21c49f7c2a27c03841eec27ed56f16e02bfe890
|
|
BLAKE2b-256 checksum How to use checksums |
f047ce9c84ac5c07ecfc5996559e87ee32bdca6c6d78078c69a122a4bc270159
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/5.0.0 CPython/3.12.2
|
Security for ipr 3.13.0
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
