iproxpy 1.0.9

A python package for iprox

Introduction

iprox is an integrated proteome resources center in China, which is built to accelerate the worldwide data sharing in proteomics.

iproxpy is an unofficial Python package for data queries and downloads of iprox database.

Home Page

https://github.com/phage-GP/iproxpy/

Dependencies

aspera-cli

conda install -c hcc aspera-cli

Useage

Installation

pip install iproxpy

Example

import iproxpy

identifier = 'PXD043774'
URL = f'https://www.iprox.cn/proxi/datasets/{identifier}'
file_url_list = iproxpy.get_file_urls(URL,identifier=identifier)

iproxpy.download(file_url_list[0],engine = 'aspera',path='~/')

iproxpy.batch_download(file_url_list[:4],
                engine = 'aspera',
                path='~/',
                processes_num=4)

Refs

https://www.iprox.cn/page/helpApi.html

https://www.ibm.com/docs/en/ahts/4.4?topic=line-ascp-command-reference