A python package for iprox
Project description
Introduction
iprox is an integrated proteome resources center in China, which is built to accelerate the worldwide data sharing in proteomics.
iproxpy is an unofficial Python package for data queries and downloads of iprox database.
Home Page
https://github.com/phage-GP/iproxpy/
Dependencies
aspera-cli
conda install -c hcc aspera-cli
Useage
Installation
pip install iproxpy
Example
import iproxpy
identifier = 'PXD043774'
URL = f'https://www.iprox.cn/proxi/datasets/{identifier}'
file_url_list = iproxpy.get_file_urls(URL,identifier=identifier)
iproxpy.download(file_url_list[0],engine = 'aspera',path='~/')
iproxpy.batch_download(file_url_list[:4],
engine = 'aspera',
path='~/',
processes_num=4)
Refs
https://www.ibm.com/docs/en/ahts/4.4?topic=line-ascp-command-reference
Project details
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iproxpy-1.0.9.tar.gz
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