isabl-cli 2.0.1

isabl_cli command line client.

-- Terms of Use: Academic Research --

Isabl CLI

isabl_cli is a command line client and SDK for the Isabl Platform infrastructure.

🧬 Isabl Platform

• Isabl is a platform for the integration, management, and processing of individual-centric multimodal data. Welcome to the Isabl Documentation!

• Isabl is a plug-and-play data science framework designed to support the processing of multimodal patient-centric data. Have questions? Ask here.

• Isabl has been developed by the Elli Papaemmanuil's Lab at Memorial Sloan Kettering Cancer Center, and it's currently used by multiple scientific groups and contributors.

• Learn more: Isabl documentation.

📓 Publication

Medina-Martínez, J.S., Arango-Ossa, J.E., Levine, M.F. et al. Isabl Platform, a digital biobank for processing multimodal patient data. BMC Bioinformatics 21, 549 (2020).

https://doi.org/10.1186/s12859-020-03879-7

Installation

pip install isabl_cli

Usage

# Set up your environment variables
export ISABL_API_URL="http://<your-isabl-instance>/api/v1/"
export CLIENT_ID="<your-client-id>"

# Authenticate and cache credentials
isabl login

# See all available commands
isabl --help

Contributing

Contributions are welcome and greatly appreciated, check our contributing guidelines!

License

isabl has a free license to use to users for academy and research. For commercial use, please contact us.

Credits

Isabl was created at Elli Papaemmanuil's lab.