Iseq resources

Scripts that allow you to:

1. Adding a new tool to the JSON file
2. Iterating over the tools in the JSON file and checking the latest version, and in the case of a new version, adding a tooltip to JIRA
3. Update existing tool/database record in JSON after updating tool/database
4. Update docker-versions.json in workflows repository

Install

pip install iseqresources

Requirements

• python >=3.6
• jira >= 3.3.0
• requests >= 2.22.0
• python-gitlab >= 3.7.0

Adding a new tool

First specify if you want to add tool or database. Input JSON file (--input-json) is from gitlab repo at path json/tools.json or json/databases.json. Default is json/tools.json.

add_tool --tools

or

add_tool --databases

You can also run on a local file:

add_tool \
    --input-json "/path/to/json/tools_or_databases.json"

It is better to add new tool directly to json file.

Checking versions and add task to JIRA

Input JSON file (--input-json and --info-json) are from gitlab repo at path json/tools.json or json/databases.json and json/info.json. Default is json/tools.json.

check_versions --tools

or

check_versions --databases

You can also run on a local files:

check_versions \
    --input-json "/path/to/json/tools_or_databases.json" \
    --info-json "/path/to/json/info.json"

Update existing tool/database record in JSON

Input JSON file (--input-json) is from gitlab repo at path json/tools.json or json/databases.json. Default is json/tools.json.

update_record --tools

or

update_record --databases

You can also run on a local file:

update_record \
    --input-json "/path/to/json/tools_or_databases.json"

Update docker-versions.json in workflows repository (based on tools.json)

After updating tools.json at json/tools.json you need to get into root directory of workflows repository and type in bash:

update_docker_versions

For possible customization options and help use flag -h

update_docker_versions -h