isosplit6

Isosplit is a non-parametric clustering method that does not require adjustable parameters nor parametric assumptions about the underlying cluster distributions. The only assumption is that clusters are unimodal and separated from one another by hyperplanes of relatively low density. The technique uses a variant of Hartigan's dip statistic and isotonic regression in its kernel operation.

Motivation: Many clustering algorithms require the tuning of parameters for each application or dataset, making them unsuitable for automated procedures that involve clustering. Some techniques require an initial estimate of the number of clusters, while density-based techniques typically require a scale parameter. Other parametric methods, such as mixture modeling, make assumptions about the underlying cluster distributions.

Isosplit is used by the MountainSort spike sorting algorithm.

preprint

Installation and usage

pip install isosplit6

from isosplit6 import isosplit6

# Prepare a N x M Numpy Array
# N = number of observations
# M = number of features
features = ...

cluster_labels = isosplit6(features)

Project links

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Latest release

1 maintainer

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Avatar for magland from gravatar.com magland

Credits

Author: Jeremy Magland

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Metadata

Project links

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  • Released:
Latest release

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Author: Jeremy Magland

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Release files for isosplit6 0.1.4

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Source distribution (sdist)

Source distribution for isosplit6 0.1.4
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Built distributions (wheels)

Table of built distributions (wheels) for isosplit6 0.1.4
File
isosplit6-0.1.4-cp311-cp311-win_amd64.whl 86.4 kB CPython 3.11 CPython 3.11 Windows x86-64 Details
isosplit6-0.1.4-cp311-cp311-win32.whl 75.8 kB CPython 3.11 CPython 3.11 Windows x86-32 Details
isosplit6-0.1.4-cp311-cp311-musllinux_1_1_x86_64.whl 653.4 kB CPython 3.11 CPython 3.11 Linux musl 1.1+ x86-64 Details
isosplit6-0.1.4-cp311-cp311-musllinux_1_1_i686.whl 715.2 kB CPython 3.11 CPython 3.11 Linux musl 1.1+ x86-32 Details
isosplit6-0.1.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 140.5 kB CPython 3.11 CPython 3.11 Linux glibc 2.17+ x86-64 Details
isosplit6-0.1.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl 157.6 kB CPython 3.11 CPython 3.11 Linux glibc 2.17+ x86-32 Details
isosplit6-0.1.4-cp311-cp311-macosx_11_0_arm64.whl 100.1 kB CPython 3.11 CPython 3.11 macOS 11.0+ ARM64 Details
isosplit6-0.1.4-cp311-cp311-macosx_10_9_x86_64.whl 119.6 kB CPython 3.11 CPython 3.11 macOS 10.9+ x86-64 Details
isosplit6-0.1.4-cp310-cp310-win_amd64.whl 85.6 kB CPython 3.10 CPython 3.10 Windows x86-64 Details
isosplit6-0.1.4-cp310-cp310-win32.whl 74.9 kB CPython 3.10 CPython 3.10 Windows x86-32 Details
isosplit6-0.1.4-cp310-cp310-musllinux_1_1_x86_64.whl 652.8 kB CPython 3.10 CPython 3.10 Linux musl 1.1+ x86-64 Details
isosplit6-0.1.4-cp310-cp310-musllinux_1_1_i686.whl 714.0 kB CPython 3.10 CPython 3.10 Linux musl 1.1+ x86-32 Details
isosplit6-0.1.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 139.1 kB CPython 3.10 CPython 3.10 Linux glibc 2.17+ x86-64 Details
isosplit6-0.1.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl 156.2 kB CPython 3.10 CPython 3.10 Linux glibc 2.17+ x86-32 Details
isosplit6-0.1.4-cp310-cp310-macosx_11_0_arm64.whl 98.9 kB CPython 3.10 CPython 3.10 macOS 11.0+ ARM64 Details
isosplit6-0.1.4-cp310-cp310-macosx_10_9_x86_64.whl 118.2 kB CPython 3.10 CPython 3.10 macOS 10.9+ x86-64 Details
isosplit6-0.1.4-cp39-cp39-win_amd64.whl 85.2 kB CPython 3.9 CPython 3.9 Windows x86-64 Details
isosplit6-0.1.4-cp39-cp39-win32.whl 74.9 kB CPython 3.9 CPython 3.9 Windows x86-32 Details
isosplit6-0.1.4-cp39-cp39-musllinux_1_1_x86_64.whl 652.7 kB CPython 3.9 CPython 3.9 Linux musl 1.1+ x86-64 Details
isosplit6-0.1.4-cp39-cp39-musllinux_1_1_i686.whl 714.1 kB CPython 3.9 CPython 3.9 Linux musl 1.1+ x86-32 Details
isosplit6-0.1.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 139.2 kB CPython 3.9 CPython 3.9 Linux glibc 2.17+ x86-64 Details
isosplit6-0.1.4-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl 156.5 kB CPython 3.9 CPython 3.9 Linux glibc 2.17+ x86-32 Details
isosplit6-0.1.4-cp39-cp39-macosx_11_0_arm64.whl 98.9 kB CPython 3.9 CPython 3.9 macOS 11.0+ ARM64 Details
isosplit6-0.1.4-cp39-cp39-macosx_10_9_x86_64.whl 118.3 kB CPython 3.9 CPython 3.9 macOS 10.9+ x86-64 Details
isosplit6-0.1.4-cp38-cp38-win_amd64.whl 85.6 kB CPython 3.8 CPython 3.8 Windows x86-64 Details
isosplit6-0.1.4-cp38-cp38-win32.whl 74.8 kB CPython 3.8 CPython 3.8 Windows x86-32 Details
isosplit6-0.1.4-cp38-cp38-musllinux_1_1_x86_64.whl 652.6 kB CPython 3.8 CPython 3.8 Linux musl 1.1+ x86-64 Details
isosplit6-0.1.4-cp38-cp38-musllinux_1_1_i686.whl 713.8 kB CPython 3.8 CPython 3.8 Linux musl 1.1+ x86-32 Details
isosplit6-0.1.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 139.0 kB CPython 3.8 CPython 3.8 Linux glibc 2.17+ x86-64 Details
isosplit6-0.1.4-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl 156.0 kB CPython 3.8 CPython 3.8 Linux glibc 2.17+ x86-32 Details
isosplit6-0.1.4-cp38-cp38-macosx_11_0_arm64.whl 98.8 kB CPython 3.8 CPython 3.8 macOS 11.0+ ARM64 Details
isosplit6-0.1.4-cp38-cp38-macosx_10_9_x86_64.whl 118.1 kB CPython 3.8 CPython 3.8 macOS 10.9+ x86-64 Details
isosplit6-0.1.4-cp37-cp37m-win_amd64.whl 85.9 kB CPython 3.7 CPython 3.7 pymalloc Windows x86-64 Details
isosplit6-0.1.4-cp37-cp37m-win32.whl 75.7 kB CPython 3.7 CPython 3.7 pymalloc Windows x86-32 Details
isosplit6-0.1.4-cp37-cp37m-musllinux_1_1_x86_64.whl 654.4 kB CPython 3.7 CPython 3.7 pymalloc Linux musl 1.1+ x86-64 Details
isosplit6-0.1.4-cp37-cp37m-musllinux_1_1_i686.whl 714.0 kB CPython 3.7 CPython 3.7 pymalloc Linux musl 1.1+ x86-32 Details
isosplit6-0.1.4-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl 139.8 kB CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-64 Details
isosplit6-0.1.4-cp37-cp37m-manylinux_2_17_i686.manylinux2014_i686.whl 158.0 kB CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.17+ x86-32 Details
isosplit6-0.1.4-cp37-cp37m-macosx_10_9_x86_64.whl 118.0 kB CPython 3.7 CPython 3.7 pymalloc macOS 10.9+ x86-64 Details

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