SpartParser

Parse, edit and write data in the SPART and SPART-XML file formats.

Includes a GUI for converting between the two formats.

Installation

PyInstaller is available on PyPI. You can install it through pip:

pip install itaxotools-spart-parser

Usage

Most of the functionality is included in the Spart class. Use the class methods to open, edit and write data in the Spart file format.

from itaxotools.spart_parser import Spart
spart = Spart.fromXML("examples/spart.xml")

spartitions = spart.getSpartitions()
print(spartitions)
subsets = spart.getSpartitionSubsets(spartitions[0])
print(subsets)
individuals = spart.getSubsetIndividuals(spartitions[0], subsets[0])
print(individuals)

spart.addIndividual("new_specimen")
spart.addSubsetIndividual(spartitions[0], subsets[0], "new_specimen")
spart.addSubsetIndividual(spartitions[1], subsets[1], "new_specimen")
spart.toMatricial("converted_copy.spart")

For more details, refer to the Spart class definition, as well as the scripts and examples folders.

Demo GUI

A graphical interface is included for converting between SPART and SPART-XML.

Install with the optional GUI dependencies:

pip install itaxotools-spart-parser[gui]
SpartParserGui

Or download and run the Windows executable from the latest release.