Skip to main content

Junker

Project description

An ultra-simple tool for manually culling micrographs, i.e. from cryo-EM data sets.

Installation

Create a conda environment for junker:

conda create -n env_junker python=3.7
source activate env_junker
conda install numpy scipy skimage pyside2
pip install mrcz

Usage

Navigate to your target directory,

source activate env_junker junker

The tool will create PNGs from every .mrc, .mrcz file in the directory, and shows a GUI that you can use to navigate.

  • ‘Spacebar’: moves the image to a ‘junk’ subdirectory.
  • ‘Enter’: moves the image to a ‘salvage’ subdirectory.
  • ‘Z’: undos the image move.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

junker-0.2.0.tar.gz (18.6 kB view hashes)

Uploaded source

Built Distribution

junker-0.2.0-py3-none-any.whl (20.1 kB view hashes)

Uploaded 3 7

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page