This release is a pre-release and may not be stable for production use.
Jupyter SMART on FHIR
Prototype extensions for loading credentials in Jupyter contexts via SMART on FHIR.
This package contains two implementations:
server_extension: a Jupyter server extension that acts as public client for a SMART server.hub_service: a JupyterHub service that acts as confidential client for a SMART server and performs asymmetric authentication.
Check the READMEs in the example folders for more information.
This package is very much a work in progress.
Server Extension
The Server extension is enabled by default on install. It registers the following handlers:
{base_url}/smart-on-fhir/launch- the launch URL to provide{base_url}/smart-on-fhir/login(an intermediate implementation-detail handler that may go away){base_url}/smart-on-fhir/callback- the OAuth callback you'll want to register
When deployed in JupyterHub, register the URLs https://jupyterhub.example.org/hub/user-redirect/smart-on-fhir/launch as the launch URL and https://jupyterhub.example.org/hub/user-redirect/smart-on-fhir/callback as the oauth callback URL.
After SMART launch, the token info will be stored in jupyter_runtime_dir() / "smart_token.json" (also available to notebooks as $SMART_TOKEN_FILE), and in $SMART_TOKEN.
$SMART_TOKEN will only be available to notebooks started after
Currently, only one token is stored at a time, so if there are multiple smart launches to a single notebook server, only the latest will be persisted.
Configure SMARTExtensionApp in jupyter_server_config.py:
c.SMARTExtensionApp.scopes = ["openid", "fhirUser", "launch", "patient/*.*"]
c.SMARTExtensionApp.client_id = "your-client-id"
see sourcecode in server_extension.py for now for more options.
JupyterHub Service
The JupyterHub service is a bare proof of concept which completes the SMART flow and fetches some sample data, it is not useful yet.
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