jupyterlab-biolm 1.1.0

JupyterLab extension for BioLM API integration

BioLM JupyterLab Extension

A JupyterLab extension that provides a graphical interface for browsing BioLM models, inserting SDK code snippets, and managing authentication - all from within JupyterLab's sidebar.

Features

🧠 Models Tab

• Browse all available BioLM models
• Search and filter models by name, description, or tags
• Click tags to insert code snippets with model + action pre-filled
• Copy model IDs to clipboard
• Expandable model descriptions

⚙️ Operations Tab

• Quick access to common SDK operation examples
• Searchable list of operations (Generate, Predict, Embed, etc.)
• One-click code insertion into notebook cells
• Organized by category

🔑 Settings Tab

• Manage multiple API key profiles
• Test API key connections
• Set default model and action preferences
• Respects BIOLM_API_KEY environment variable

Installation

From PyPI (when available)

pip install jupyterlab-biolm

From Source

# Clone the repository
git clone https://github.com/yourusername/jupyterlab-biolm.git
cd jupyterlab-biolm

# Install the extension
pip install -e .

# Build the extension
jlpm install
jlpm build

# Rebuild JupyterLab
jupyter lab build

Usage

1. Open the Extension: The BioLM sidebar will appear in JupyterLab's left sidebar. If not visible, use the command palette (Cmd/Ctrl + Shift + C) and search for "Open BioLM".

2. Configure API Key:

   • Go to the Settings tab
   • Add a new profile with your API key
   • Or use the BIOLM_API_KEY environment variable

3. Browse Models:

   • Switch to the Models tab
   • Search or filter by tags
   • Click a tag button to insert code for that model + action

4. Use Operations:

   • Switch to the Operations tab
   • Browse common SDK operations
   • Click "Insert" to add code to your active notebook cell

Development

Prerequisites

• Node.js >= 16
• Python >= 3.8
• JupyterLab >= 4.0.0

Setup

# Install dependencies
jlpm install

# Build TypeScript
jlpm build:lib

# Build extension in development mode
jlpm build:labextension:dev

# Watch for changes
jlpm watch

Project Structure

jupyterlab-biolm/
├── src/                    # TypeScript source
│   ├── index.ts           # Extension entry point
│   ├── widget.tsx         # Main sidebar widget
│   ├── api/               # API client
│   ├── components/        # React components
│   ├── services/          # Business logic
│   └── data/              # Static data
├── style/                  # CSS styles
├── schema/                 # Settings schema
└── jupyterlab_biolm/       # Python package

Configuration

The extension stores settings in JupyterLab's settings system. You can configure:

• API Key Profiles: Multiple named profiles with different API keys
• Active Profile: Which profile to use (or environment variable)
• Default Model: Default model ID for code generation
• Default Action: Default action (predict, generate, etc.)

API Integration

The extension fetches model metadata from https://api.biolm.ai/models. Models are cached for 5 minutes to reduce API calls.

Requirements

• JupyterLab >= 4.0.0
• React >= 18.0.0

License

BSD-3-Clause

Support

For issues and feature requests, please visit the GitHub repository.