Generate Highlighted SVG/PNG for KEGG Pathway
Installation
pip install kegg_viewer
Examples
kegg_viewer -h
kegg_viewer -p ko00196
kegg_viewer -p ko00196,ko00197
kegg_viewer -p path.list
kegg_viewer -p path.list -g gene.list -c ./cache -O output
kegg_viewer -p path.list -g gene.list -m online
kegg_viewer -p path.list -g gene.list -t png
kegg_viewer -p path.list -g gene.list -t both
genelist examples
K08913 red
K08912 blue
LAMA2 blue
K02289 red
K20713 blue
K08910 #FF1188
example results
png mode
SVG Mode:
local# use local image as backgroundonline# use online image as backgroundbase64# convert background to base64, default and recommend!
TODOs
- add list, link method for KEGGRest
- prepare cache data(png/conf) for input organism
1 maintainer
Metadata
1 maintainer
Release files for kegg-viewer 1.0.6
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| kegg_viewer-1.0.6.tar.gz | 208.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| kegg_viewer-1.0.6-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 216.9 kB
Release files / kegg_viewer-1.0.6.tar.gz
| Download URL | kegg_viewer-1.0.6.tar.gz |
|---|---|
| Size | 208.6 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.8.3
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Release files / kegg_viewer-1.0.6-py3-none-any.whl
| Download URL | kegg_viewer-1.0.6-py3-none-any.whl |
|---|---|
| Size | 8.3 kB |
| Tags | Python 3 |
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SHA-256 checksum How to use checksums |
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twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.8.3
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