Generate Highlighted SVG/PNG for KEGG Pathway

Installation

pip install kegg_viewer

Examples

kegg_viewer -h
kegg_viewer -p ko00196
kegg_viewer -p ko00196,ko00197
kegg_viewer -p path.list
kegg_viewer -p path.list -g gene.list -c ./cache -O output
kegg_viewer -p path.list -g gene.list -m online
kegg_viewer -p path.list -g gene.list -t png
kegg_viewer -p path.list -g gene.list -t both

genelist examples

K08913	red
K08912	blue
LAMA2	blue
K02289	red
K20713	blue
K08910	#FF1188

example results

png mode png svg mode svg

SVG Mode:

local # use local image as background
online # use online image as background
base64 # convert background to base64, default and recommend!

TODOs

add list, link method for KEGGRest
prepare cache data(png/conf) for input organism

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

kegg_viewer-1.0.6.tar.gz (208.6 kB view details)

Uploaded Dec 7, 2021 Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

The dropdown lists show the available interpreters, ABIs, and platforms. Enable javascript to be able to filter the list of wheel files.

kegg_viewer-1.0.6-py3-none-any.whl (8.3 kB view details)

Uploaded Dec 7, 2021 Python 3

File details

Details for the file kegg_viewer-1.0.6.tar.gz.

File metadata

Download URL: kegg_viewer-1.0.6.tar.gz
Upload date: Dec 7, 2021
Size: 208.6 kB
Tags: Source
Uploaded using Trusted Publishing? No
Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.8.3

File hashes

Hashes for kegg_viewer-1.0.6.tar.gz
Algorithm	Hash digest
SHA256	`fa8f183bf2e674330d30b9fd67420ee637db9920b48cc79f403fa2ea3eb2feff`
MD5	`ded1fdb39aefac4f443b4f5d01c59c84`
BLAKE2b-256	`0e85841d456bf7a3413c2f4d834f4c2b9682f1a06c6e61aa4c3bebb45f740065`

See more details on using hashes here.

File details

Details for the file kegg_viewer-1.0.6-py3-none-any.whl.

File metadata

Download URL: kegg_viewer-1.0.6-py3-none-any.whl
Upload date: Dec 7, 2021
Size: 8.3 kB
Tags: Python 3
Uploaded using Trusted Publishing? No
Uploaded via: twine/3.4.1 importlib_metadata/4.0.1 pkginfo/1.7.0 requests/2.25.1 requests-toolbelt/0.9.1 tqdm/4.42.1 CPython/3.8.3

File hashes

Hashes for kegg_viewer-1.0.6-py3-none-any.whl
Algorithm	Hash digest
SHA256	`495e2b8e73e0d581b9f269b612fa541bfef177b20adc3d1e1e76485075e99ea4`
MD5	`d2932e154b8ed4e632e4523facfbca18`
BLAKE2b-256	`f1559076ff8877a3e6885af6095f50ca81fe63c4608a02280d28a78ba72493a2`