KnowEng toolbox
Project description
# KnowEnG's Pipelines Library
This repository provides Python scripts to support Knowledge Engine for Genomics (KnowEnG) pipelines, an NIH BD2K Center of Excellence.
There are four modules that one can choose from:
| **Modules** | **Description** |
| ----------------------------- | ------------------------------------------- |
| toolbox.py | Contains basic computation functions for all pipelines |
| data_cleanup_toolbox.py | Contains functions for data_cleanup_pipeline|
| distributed_computing_utils.py| Contains functions for parallel computing and distribute computing |
| redis_utilities.py | Contains API to call redis database |
* * *
## How to use this library
* * *
### 1. Install python3-pip in your local machine
```
apt-get install python3-pip
```
### 3. Install knpackage in your local machine
```
pip3 install knpackage
```
### 2. Import modules from knpackage in your Python script
```
import knpackage.<module_name>
```
This repository provides Python scripts to support Knowledge Engine for Genomics (KnowEnG) pipelines, an NIH BD2K Center of Excellence.
There are four modules that one can choose from:
| **Modules** | **Description** |
| ----------------------------- | ------------------------------------------- |
| toolbox.py | Contains basic computation functions for all pipelines |
| data_cleanup_toolbox.py | Contains functions for data_cleanup_pipeline|
| distributed_computing_utils.py| Contains functions for parallel computing and distribute computing |
| redis_utilities.py | Contains API to call redis database |
* * *
## How to use this library
* * *
### 1. Install python3-pip in your local machine
```
apt-get install python3-pip
```
### 3. Install knpackage in your local machine
```
pip3 install knpackage
```
### 2. Import modules from knpackage in your Python script
```
import knpackage.<module_name>
```
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