Ingestion pipeline for the koji-db database: parsing, chunking, and multi-vector embeddings
Project description
Shikomi
Ingestion pipeline for Kōji — document parsing, chunking, multi-vector embeddings, and VLM enrichment.
Shikomi transforms raw documents (PDF, DOCX, PPTX, audio, images, and more) into ColBERT-style multi-vector embeddings ready for storage and semantic search in Kōji.
Installation
# Core ingestion (parsing, chunking, embeddings)
pip install shikomi
# With document parsing support (Docling, PDF)
pip install "shikomi[document]"
# With LibreOffice-based rendering (DOCX/PPTX page images)
pip install "shikomi[rendering]"
# With MLX VLM enrichment engine (Apple Silicon)
pip install "shikomi[enrichment]"
# With Kōji storage integration (PyArrow)
pip install "shikomi[koji]"
Features
Multi-Vector Embeddings
Shikomi generates ColBERT-style multi-vector embeddings where each document is represented by a set of per-token vectors, enabling MaxSim late-interaction scoring:
from shikomi import MultiVectorEmbedding
import numpy as np
data = np.random.randn(10, 128).astype(np.float32)
emb = MultiVectorEmbedding(num_tokens=10, dim=128, data=data)
blob = emb.to_blob() # serialize for Lance storage
recovered = MultiVectorEmbedding.from_blob(blob)
Document Parsing and Chunking
Parse and chunk documents in a variety of formats via Docling:
from shikomi import parse, chunk, IngestConfig
config = IngestConfig()
parsed = parse("report.pdf", config=config)
chunks = chunk(parsed, config=config)
Supported formats include PDF, DOCX, PPTX, Markdown, HTML, images, and audio files.
DenseTextEngine (Lightweight Embedding)
For text-only workloads without vision, use DenseTextEngine backed by mlx-embeddings:
from shikomi import DenseTextEngine
engine = DenseTextEngine()
embedding = engine.embed("The quick brown fox")
Gemma 4 E4B VLM Enrichment (Apple Silicon)
Augment parsed documents with VLM-generated descriptions, code analysis, formula interpretations, and document summaries using the Gemma 4 E4B model via mlx-vlm:
from shikomi.enrichment import GemmaEnrichmentEngine
engine = GemmaEnrichmentEngine()
enriched = await engine.enrich(parsed_content)
# enriched.figures now contain model-generated captions
# enriched.summary contains a document-level summary
GPU / Metal Memory Management
Release cached GPU or Metal memory between batch operations to prevent OOM errors:
from shikomi.gpu import release_gpu_memory
for batch in large_corpus:
process(batch)
release_gpu_memory() # returns allocations to OS after each batch
LibreOffice Page Renderer
Convert DOCX and PPTX slides to page images for visual ingestion:
from shikomi.parser import parse
# Renders pages via LibreOffice headless, returns per-page images in ParsedContent
result = parse("slides.pptx", config=config)
Audio Chunking
Ingest long-form audio with automatic chunking:
from shikomi import IngestConfig, AudioConfig
config = IngestConfig(audio=AudioConfig(chunk_duration_secs=30))
result = parse("interview.mp3", config=config)
Full Ingestion Pipeline
from shikomi import Ingester, IngestConfig
ingester = Ingester(config=IngestConfig())
result = await ingester.ingest("document.pdf")
print(result.chunks) # List[TextChunk]
print(result.embeddings) # List[MultiVectorEmbedding]
License
Apache-2.0
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koji-ingest-release.yml on TuckerTucker/tkr-koji
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refs/tags/koji-ingest-v0.1.0 - Owner: https://github.com/TuckerTucker
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https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
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