koobi 0.0.6

File-native model and experiment registry

Koobi

File-native model and experiment registry for local workflows.

Koobi stores experiment metadata as plain Markdown cards, builds a disposable DuckDB index, and serves an interactive Marimo UI for browsing, filtering, visualizing, and editing cards. The source of truth is always your files.

Why Koobi

Most experiment trackers assume a hosted service and database-backed runs. Koobi is designed for local-first users who want:

• readable, versionable records in Git
• zero-server operation
• domain-agnostic metrics and parameters
• workflows friendly to both humans and coding agents

Current MVP Capabilities

• Markdown card parsing and serialization with preserved body/key ordering
• additive card updates (only targeted fields are rewritten)
• DuckDB index build with:
  • cards table (metadata + body)
  • measures table (long-format metrics)
  • series_registry table (series pointers)
• Marimo app with:
  • project/status/search filters
  • model table view
  • card detail view (metrics/params/tags/body)
  • edit form (name/status/tags/body) with write-back
  • one measure bar chart
• Execution model (Mode B) — optionally let Koobi run an experiment instead of just recording it:
  • one function registry with component / series / measure / items kinds; functions live in your package and self-register on import (never embedded in cards)
  • components declared as cards (a model, a framework) backed by registered functions, composed into a typed-port dataflow
  • koobi run <experiment> resolves the components, runs them in dependency order, computes the declared measures, persists a result series, and stamps provenance — writing the same card a human would have authored by hand
  • opt-in input-hash caching (off by default, so research runs always re-execute)
  • a finance pack providing Sharpe / Calmar / max-drawdown measures
• CLI commands:
  • koobi init
  • koobi new
  • koobi index
  • koobi run
  • koobi ui

Architecture Overview

cards/*.md  -->  index.duckdb  -->  Marimo app
   ^                                  |
   |---------- edit/write-back -------|

• Cards are authoritative.
• Index is derived and disposable.
• UI reads from index and writes edits back to cards.

Koobi works two ways over one data model: you can record results yourself (Mode A), or declare runnable components and let koobi run produce the card (Mode B). Either way the card is the contract; execution is just an optional producer of it. The engine stays domain-free — it wires named ports and runs functions; finance knowledge (the Sharpe formula, date slicing) lives only in packs and your own project code.

experiment card  -->  resolve components  -->  run in dependency order  -->  measures + series  -->  write card back  -->  reindex
   (model + framework, by typed ports)                                          (provenance stamped)

Installation

Install into any project or environment directly from Git:

pip install git+https://github.com/blu3c0ral/koobi.git

This installs the koobi command and the importable koobi package.

For local development on Koobi itself, install editable with dev extras:

python3 -m venv .venv
source .venv/bin/activate
python -m pip install -e ".[dev]"

Quickstart

Koobi discovers its configuration automatically: every command searches the current directory and its parents for a koobi.toml. Work from inside your workspace and no --config flag is needed.

1) Create (or enter) a workspace

koobi init --path my-registry
cd my-registry

Or use the bundled demo workspace:

python examples/local_example_to_cards.py --overwrite
cd examples/local

2) Build the index

koobi index

3) Launch the UI

koobi ui

The UI opens at http://localhost:2718.

Running from outside the workspace

If you prefer not to cd, point Koobi at the config explicitly or via an environment variable (precedence: --config > KOOBI_CONFIG > current dir):

koobi ui --config examples/local/koobi.toml
# or
export KOOBI_CONFIG=examples/local/koobi.toml
koobi ui

CLI Reference

Initialize a new workspace:

koobi init --path /path/to/workspace

Create a new card (run from inside the workspace):

koobi new demo_project.my_model

Rebuild index:

koobi index

Run an experiment (Mode B):

koobi run my_project.exp_001            # --force to ignore the cache
koobi run my_project.exp_001 --dry-run  # validate wiring only — runs nothing, pulls no data

run exits non-zero on a degraded run (a component raised, a port produced no output, or a declared measure didn't compute), printing the reasons to stderr — so a scheduled run can't mistake a silent partial failure for success. -v/-vv add per-node progress and (at -vv) tracebacks, and may go before or after the subcommand.

Run UI:

koobi ui

Running Experiments (Mode B)

An experiment is a composition of components — e.g. a model and an entry/exit framework. You declare each as a card backed by a registered function, then declare an experiment card that wires them together; koobi run executes the graph and fills in the results.

Point config at your function module and any datasets (a name → loader binding — the engine only sees the name; your loader gives it meaning):

# koobi.toml
[koobi]
function_modules = ["my_project.koobi_functions"]   # imported to register runners/measures
cache = false                                        # opt-in; default off

[datasets.prices]
loader = "my_project.koobi_functions:load_prices"
params = { universe = "16etf" }

[display]
packs = ["finance"]                                  # Sharpe / Calmar / max-drawdown

Register the functions in your own package (never code in cards):

# my_project/koobi_functions.py
from koobi import registry

@registry.component("my_project.model", produces="predictions")
def run_model(ctx):
    return predict(ctx.artifact("model"), ctx.data("prices"))   # resources pulled in

@registry.component("my_project.framework", needs=["predictions"], produces="equity_curve")
def run_framework(ctx):
    return backtest(ctx.get("predictions"), ctx.data("prices"), **ctx.params)

Declare the cards. needs/produces list ports only (the node-to-node dataflow); external inputs like prices are pulled via ctx.data, not wired as ports:

# model card — produces a "predictions" port
id: my_project.model
type: model
runner: my_project.model
produces: predictions

# framework card — consumes "predictions", produces "equity_curve"
id: my_project.framework
type: framework
runner: my_project.framework
needs: [predictions]
produces: equity_curve

# experiment card — composes the two by role and pins params
id: my_project.exp_001
type: experiment
components:
  model: my_project.model
  framework: my_project.framework
params: { entry_threshold: 0.025 }
measures: [sharpe, calmar, max_drawdown]

Then koobi run my_project.exp_001 writes metrics, a result series, and a provenance block back into the experiment card. See docs/backend_technical_design.md §16 for the full model.

Use as a Library

Koobi's core is importable, so other projects and coding agents can read, query, and write cards programmatically:

from koobi import load_config, build, connect, query_cards
from koobi import Card, load_card, save_card

# Resolve config by searching upward from a path (file or directory)
cfg = load_config("path/to/workspace")

# Build the disposable DuckDB index from the Markdown cards
build(cfg)

# Query cards joined with wide-format measures
con = connect(cfg)
df = query_cards(con, project="demo_project", status="candidate")

# Read, mutate, and write back a single card (only targeted fields change)
card = load_card("path/to/workspace/cards/demo_project.my_model.md")
card.status = "promoted"
save_card(card, fields=["status"])

The execution engine is importable too:

from koobi import load_config, bootstrap, resolve_card, run_experiment

cfg = load_config("path/to/workspace")
bootstrap(cfg)                                   # load packs + import function_modules
exp = resolve_card(cfg, "my_project.exp_001")
run_experiment(exp, cfg, ran_at="2026-06-26T00:00:00")   # writes results back to the card

The full public API is exported from the top-level koobi package; see koobi.__all__.

Repository Layout

src/koobi/                  # core package (schema, cards, config, index, charts, app, cli)
src/koobi/engine.py         # execution engine (run_experiment, Context, toposort)
src/koobi/registry.py       # component/series/measure function registry + bootstrap
src/koobi/packs/            # domain packs (finance: Sharpe/Calmar/max-drawdown)
tests/                      # unit tests
examples/local/             # self-contained demo workspace
examples/local_example_to_cards.py
docs/                       # product, technical, and future feature docs

Development

Run tests:

pytest

Recommended pre-PR checklist:

• run pytest
• regenerate local example cards if example inputs changed
• verify koobi index and koobi ui against examples/local/koobi.toml

Documentation

• docs/product_design.md - product framing and roadmap
• docs/backend_technical_design.md - architecture and data contracts
• docs/status.md - living snapshot of what is built vs. planned
• docs/future_features.md - planned automation and extensions

Status

Phase 0 (the file-native registry) is built, reviewed, and stable. The §16 B1 execution slice — koobi run composing a model + framework experiment — is now implemented and tested. Next: card types (framework/strategy) as first-class declared types, then parameter sweeps and the measure-vs-parameter dashboards. See docs/status.md.