kzstack 1.0.1

a package to stack images for many purposes

kzstack

kzstack is a package to stack images for many purposes.

• HomePage: https://github.com/kzhu2099/KZ-Stack
• Issues: https://github.com/kzhu2099/KZ-Stack/issues

Author: Kevin Zhu

Features

• ability to stack images
• gamma correction accounted
• custom quality / denoising functions
• image showing / saving
• bias usage

Installation

To install kzstack, use pip: pip install kzstack.

However, many prefer to use a virtual environment.

macOS / Linux:

# make your desired directory
mkdir /path/to/your/directory
cd /path/to/your/directory

# setup the .venv (or whatever you want to name it)
pip install virtualenv
python3 -m venv .venv

# install kzstack
source .venv/bin/activate
pip install kzstack

deactivate # when you are completely done

Windows CMD:

# make your desired directory
mkdir C:path\to\your\directory
cd C:path\to\your\directory

# setup the .venv (or whatever you want to name it)
pip install virtualenv
python3 -m venv .venv

# install kzstack
.venv\Scripts\activate
pip install kzstack

deactivate # when you are completely done

Usage

PLEASE HAVE ALIGNED IMAGES!! STACKING WILL NOT TURN OUT GOOD OTHERWISE

First, import KZStack and all its functions (for denoising / quality).

Follow the provided stack_accumualte.ipynb for your data (change the path).

After, you may choose to use the average or input your own denoising / quality control functions.

These must be in the format of def func(image), without additional parameters. Other parameters (like a threshold) should not be args to the function.

License

The License is an MIT License found in the LICENSE file.