labtasker-plugin-script-generate 0.1.3

A Labtasker plugin that decomposes bash script into submit and job scripts..

labtasker-plugin-script-generate

[!WARNING] This plugin does not cover all possible scenarios and does not guarantee the correctness of the generated scripts. It is strongly advised to double-check and manually adjust the generated scripts to your need.

This is a plugin for Labtasker that helps you to automatically split your bash script into submit script and job script.

Install

pip install labtasker-plugin-script-generate

Example

You can find the code in the demo directory.

Imagine you have a bash wrapper script for your machine learning experiment. To divide the script into a submit script and a job script, simply add a few special comments (e.g., #@submit, #@task, #@end).

#!/bin/bash

export CUDA_HOME=/usr/local/cuda-12.1

+#@submit
for dataset in imagenet cifar10 mnist; do
  for model in resnet50 vit transformer; do
    LOG_DIR=/path/to/logs/$dataset/$model

+    #@task
    python train.py --dataset $dataset \
      --model $model \
      --cuda-home $CUDA_HOME \
      --log-dir $LOG_DIR
+    #@end

  done
done
+#@end

echo "done"

Run:

labtasker generate original.sh

You will see original_submit.sh and original_run.sh generated at the same directory, with the following content:

original_submit.sh:

#!/bin/bash
# This script is generated by Labtasker from original.sh

export CUDA_HOME=/usr/local/cuda-12.1

for dataset in imagenet cifar10 mnist; do
  for model in resnet50 vit transformer; do
    LOG_DIR=/path/to/logs/$dataset/$model

    labtasker task submit -- --CUDA_HOME "$CUDA_HOME" --LOG_DIR "$LOG_DIR" --dataset "$dataset" --model "$model"

  done
done

echo "done"

original_run.sh:

#!/bin/bash
# This script is generated by Labtasker from original.sh

export CUDA_HOME=/usr/local/cuda-12.1

LABTASKER_TASK_SCRIPT=$(mktemp)
cat <<'LABTASKER_LOOP_EOF' > "$LABTASKER_TASK_SCRIPT"
CUDA_HOME=%(CUDA_HOME)
LOG_DIR=%(LOG_DIR)
dataset=%(dataset)
model=%(model)
    python train.py --dataset $dataset \
      --model $model \
      --cuda-home $CUDA_HOME \
      --log-dir $LOG_DIR
LABTASKER_LOOP_EOF
labtasker loop --executable /bin/bash --script-path $LABTASKER_TASK_SCRIPT

echo "done"