landerslabutils

Landers Lab utilities for ALS compute project

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Project description

LandersLabUtils functions

Library overview:

hail_init(): Initializes a Hail session with specific project and workspace settings.
genetable_fromMT(): Filters a Hail MatrixTable by gene and variant type, then exports the results as a TSV file.
singlesample_fromMT(): Filters a Hail MatrixTable for a single sample and exports the results as either a table or a VCF file.
jointVCF_fromMT(): Filters a Hail MatrixTable by sample groups and exports the results as VCF files for each chromosome.
extract_regions(): Filters a Hail MatrixTable based on genomic regions.

		For any doubt, please write to a.brusati@auxologico.it

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This version

0.0.3

Jul 18, 2024

0.0.1

Jul 16, 2024

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