Landers Lab utilities for ALS compute project
Project description
LandersLabUtils functions
Library overview:
-
hail_init(): Initializes a Hail session with specific project and workspace settings.
-
genetable_fromMT(): Filters a Hail MatrixTable by gene and variant type, then exports the results as a TSV file.
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singlesample_fromMT(): Filters a Hail MatrixTable for a single sample and exports the results as either a table or a VCF file.
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jointVCF_fromMT(): Filters a Hail MatrixTable by sample groups and exports the results as VCF files for each chromosome.
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extract_regions(): Filters a Hail MatrixTable based on genomic regions.
A comprehensive documentation is available at: https://albertobrusati.github.io/LandersLabUtils/
For any doubt, please write to a.brusati@auxologico.it
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