landerslabutils 0.0.1

Landers Lab utilities for ALS compute project

LandersLab functions

Library overview

Functions:

• hail_init(): Initializes a Hail session with specific project and workspace settings.

• genetable_fromMT(): Filters a Hail MatrixTable by gene and variant type, then exports the results as a TSV file.

• singlesample_fromMT(): Filters a Hail MatrixTable for a single sample and exports the results as either a table or a VCF file.

• jointVCF_fromMT(): Filters a Hail MatrixTable by sample groups and exports the results as VCF files for each chromosome.

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