Landers Lab utilities for ALS compute project
Project description
LandersLabUtils functions
Library overview:
-
hail_init(): Initializes a Hail session with specific project and workspace settings.
-
genetable_fromMT(): Filters a Hail MatrixTable by gene and variant type, then exports the results as a TSV file.
-
singlesample_fromMT(): Filters a Hail MatrixTable for a single sample and exports the results as either a table or a VCF file.
-
jointVCF_fromMT(): Filters a Hail MatrixTable by sample groups and exports the results as VCF files for each chromosome.
-
extract_regions(): Filters a Hail MatrixTable based on genomic regions.
A comprehensive documentation is available at: https://albertobrusati.github.io/LandersLabUtils/
For any doubt, please write to a.brusati@auxologico.it
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Hashes for landerslabutils-0.0.3-py3-none-any.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | ab79b260d4d033f6cc14d6051d3549ac92c00b1308b8161de9b07c6d3b17eefd |
|
MD5 | 3315be253c4f7a99f361dc62afa0110e |
|
BLAKE2b-256 | 0cf30357fc44085473e6ef4e8729e68bca6fd1353139a81c74f0998a5882dbf0 |