lara-django-sequences 0.2.91

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LARA-django Sequences

LARA python-django application for managing sequences, like DNA, RNA, peptide/protein, PNA, XNA....

Installation

In the active LARA-django environment, install

cd  lara_django_sequences
pip install .

Add "my_new_app" to your INSTALLED_APPS setting like this:

INSTALLED_APPS = [
    ...
    ' lara_django_sequences',
]

Include the lara-django-app URLconf in your project urls.py like this:

path(' lara_django_sequences', include('my_new_app.urls')),

Run

python manage.py makemigrations  lara_django_sequences
python manage.py migrate 

to create the my_new_app database models.

In case you like to test the app, please load the demo data:

Start the development server

lara-django-dev runserver

and visit

http://127.0.0.1:8000/admin/

to create some entries (you'll need the Admin app enabled).

Environment variables

for development, please set

export DJANGO_ALLOWED_HOSTS=localhost
export DJANGO_SETTINGS_MODULE=lara_django.settings.devel

for production, please set

export DJANGO_SETTINGS_MODULE=lara_django.settings.production

if your media does not reside in the default media folder, please set environment variable to

export DJANGO_MEDIA_PATH='path/to/my/media'

to use user defined fixtures, please set: :: export

DJANGO_FIXTURE_PATH='path/to/user/fixtures'

Testing all applications

Basic Commands

Type checks

Running type checks with mypy:

$ mypy lara_django_sequences

Test coverage

To run the tests, check your test coverage, and generate an HTML coverage report:

$ coverage run -m pytest
$ coverage html
$ open htmlcov/index.html

Running tests with pytest

$ pytest

License: GPLv3

Contributors ✨

Thanks goes to these wonderful people (emoji key):

This project follows the all-contributors specification. Contributions of any kind welcome!