Automatic ROI detection using cellpose, exports to .rgn files
Project description
Leica_ROI_finder
Automatic ROI finder for Leica Stellaris 8
- Automatic segmentation using cellpose 3
- ROI filtering using intensity, size and circularity
- Exports ROIs to Leica .rgn files, can be imported into LAS X navigator
Installation
Leica ROI finder is available on PyPi and can be installed as follows:
pip install leica-roi-finder
Workflow
Load LIF image into ROI finder:
Perform segmentation using cellpose, filter ROIs using intensity, size and circularity:
Export ROIs to Leica .rgn format and import into LAS X Navigator:
Perform imaging on all regions:
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file leica_roi_finder-0.0.4.tar.gz.
File metadata
- Download URL: leica_roi_finder-0.0.4.tar.gz
- Upload date:
- Size: 26.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
d7cd155ba9aacd461972de4669073a11e96e1f334534f881a611949b71643055
|
|
| MD5 |
e6f6a280a415b1bd4149861db7eee81b
|
|
| BLAKE2b-256 |
fc7c51d6ddbbe30b5059e9b532a3d3844f4af5a1ec03e42add178997b666215f
|
File details
Details for the file leica_roi_finder-0.0.4-py3-none-any.whl.
File metadata
- Download URL: leica_roi_finder-0.0.4-py3-none-any.whl
- Upload date:
- Size: 27.4 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.13.2
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
76bd2cc8ab1a0713b63a022fe2d885209067a68f1af6625fc591be6404fdf758
|
|
| MD5 |
6f99b84030693735382e6137f68bfdd6
|
|
| BLAKE2b-256 |
fbc65ca5817385362a50e8900b033cefc2050e7a300498202880e2fe96963c10
|
