Leica_ROI_finder
Automatic ROI finder for Leica Stellaris 8
- Automatic segmentation using cellpose 3
- ROI filtering using intensity, size and circularity
- Exports ROIs to Leica .rgn files, can be imported into LAS X navigator
Installation and usage
Leica ROI finder is available on PyPi and can be installed as follows:
pip install leica-scripts
Activate the GUI using:
python -m leica_scripts
Workflow
Load LIF image into ROI finder:
Perform segmentation using cellpose, filter ROIs using intensity, size and circularity:
Ron Scripts:
Perform imaging on all regions:
1 maintainer
Metadata
1 maintainer
Release files for leica-scripts 0.0.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| leica_scripts-0.0.3.tar.gz | 25.8 kB | Without provenance | Details for leica_scripts-0.0.3.tar.gz |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Actions Reset |
|---|---|---|---|---|
| leica_scripts-0.0.3-py3-none-any.whl | Python 3 | none | any | Details for leica_scripts-0.0.3-py3-none-any.whl |
Total release size: 52.8 kB
Release files / leica_scripts-0.0.3.tar.gz
| Download URL | leica_scripts-0.0.3.tar.gz |
|---|---|
| Size | 25.8 kB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.0
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Release files / leica_scripts-0.0.3-py3-none-any.whl
| Download URL | leica_scripts-0.0.3-py3-none-any.whl |
|---|---|
| Size | 27.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.1.0 CPython/3.12.0
|
Security for leica-scripts 0.0.3
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