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convenience library for talking with leica matrix screener scanning templates

Project description

build-status-image pypi-version

Overview

Convenience library for talking with Leica matrix screener scanning template XMLs.

Installation

Install using pip

pip install leicascanningtemplate

Example

from leicaleicascanningtemplate import ScanningTemplate

tmpl = ScanningTemplate('path/to/scantempl.xml')
tmpl.add_well(well_x=2, well_y=3, start_x=30e-3, start_y=44e-3)
tmpl.write()

# x stage position of field
print(tmpl.field(well_x=1, well_y=1, field_x=1, field_y=1).FieldXCoordinate)

Read more on available elements and attributes in SCANNINGTEMPLATE.md.

Documentation

Read about available commands in the API reference: http://leicascanningtemplate.rtfd.org/

Development

Install dependencies and link development version of leicascanningtemplate to pip:

pip install -r dev-requirements.txt
./setup.py develop

Testing

pip install tox
tox

Build documentation locally

To build the documentation:

make docs

Project details


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