leicascanningtemplate 0.0.3

convenience library for talking with leica matrix screener scanning templates

Overview

Convenience library for talking with Leica matrix screener scanning template XMLs.

Installation

Install using pip…

pip install leicascanningtemplate

Example

from leicaleicascanningtemplate import ScanningTemplate

tmpl = ScanningTemplate('path/to/scantempl.xml')
tmpl.add_well(well_x=2, well_y=3, start_x=30e-3, start_y=44e-3)
tmpl.write()

# x stage position of field
print(tmpl.field(well_x=1, well_y=1, field_x=1, field_y=1).FieldXCoordinate)

Read more on available elements and attributes in SCANNINGTEMPLATE.md.

Documentation

Read about available commands in the API reference: http://leicascanningtemplate.rtfd.org/

Development

Install dependencies and link development version of leicascanningtemplate to pip:

pip install -r dev-requirements.txt
./setup.py develop

Testing

pip install tox
tox

Build documentation locally

To build the documentation:

make docs